RnoINT0067137 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211509900-211510782:-
Coord C1 exon
chr2:211510640-211510782
Coord A exon
chr2:211510024-211510639
Coord C2 exon
chr2:211509900-211510023
Length
616 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CGCCTTTTGTCATCACTAAGGGA
3' ss Score
4.7
Exon sequences
Seq C1 exon
GTGGGAGAAGCAAGAGCTCTCTATAATCTTGGAAATGTGTATCACGCCAAAGGGAAAAGTTTCGGCTGCCCAGGTCCACAAGATGTAGGAGAGTTTCCAGAAGAAGTGAGGCTCGCCCTACAGGCAGCTGTGGAGCTCTATGA
Seq A exon
GTGAGTACAGTGGGCCCTGCGGGAGTTTTCACTCAGTAGATTTCCAAGTTTGTGAAAGATAGAAAAATTCTGAGCCAGTTAACTCGTAGTAGGTTCACATGCCTTTCCTCCCTGTTTGAAAGTAGCCTAATCTACATTCTGAATTCCAGTACAACATATTGTGACCCCATCTCAAACAAATCTGCAGTTTCCCTTAAACTGCAGACCAGTGCCCCTTAGTGGTAAAAGCAAAAAATATCAGTGCTTAAATTTATCTGGGGTAAACCAAGTATTTGACCAGTAGAACTTCCTAGAATTGCTTTGCTATAAGGCTTCAAGATCGTCCCTTGATGACTCTCAATAAAGATGTGTAGTTAATGTTTTAGTGAACAAAGAATTCCAGCCGTTTCACAACTGCCCTGCCTCAGGATGTACCTTTAAGCCATCGCACATTATATAGGCTTACTTTTTCCTGATACGTAGAGTCTTAATTCTGCAATTATAGCTCCATGGCTAGTGCCTGTCTAGCACACATAGGCCCTGGCCTTAAATCCTCAGCTATGAGAACAAACTGCCTGTAAATGAGCTAAGAATTTCTCCTGAACTTACATTGTCACCGCCTTTTGTCATCACTAAG
Seq C2 exon
GGAAAACCTGTCGTTAGTAACTGCTCTAGGTGACCGAGCAGCCCAGGGACGAGCCTTTGGGAACCTCGGCAACACACACTACCTCCTCGGCAACTTCAGGGATGCCGTTATAGCTCATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(32.3=41.7),PF134241=TPR_12=PU(15.5=18.8)
A:
NA
C2:
PF134141=TPR_11=PU(40.3=69.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCTCTCTATAATCTTGGA
R:
TCATGAGCTATAACGGCATCCC
Band lengths:
254-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]