GgaINT0040077 @ galGal4
Intron Retention
Gene
ENSGALG00000006538 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr6:19636453-19637110:+
Coord C1 exon
chr6:19636453-19636559
Coord A exon
chr6:19636560-19637029
Coord C2 exon
chr6:19637030-19637110
Length
470 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
CGTTTTGTTTTTACTTGCAGAAC
3' ss Score
11.05
Exon sequences
Seq C1 exon
GCGTGCTACCCGGAGAGTTCGAGAGCTGTGGTGGCAGGGATTACCACCAAGTGTTCGTGGGAAAGTGTGGAGTCTAGCAGTGGGGAACGAGTTAAATATCACTCCTG
Seq A exon
GTATGCCTTAACATATTACATTTTAGTGCAAAATACAGTTGGTTATTTTCAGTGGAAATTTAAGATTTCTTTGCGTAGAACTCGGTGTATTTTTTACAATTAGACAATCATAGCCTGGTAAGTTATGAAAATAGAGTCCAAAACTTTAAAAAATGTTTTAGTCTTATAAAAGAGTTGAGGGAGAATTGTTTAGTTCGTAACTAATGTTTTTGGTGAACTGGAAGTGTTTCAACCTATTCACAAAGTAAAAATCTGAATGGTTTGAAACATGATTTTCCTCCTGTAATTTGAATATTCACCACAGAAAGACGCATAAACTCTGTGTGGTGGTATTCCAGTGGCTGGTTGTAACCATGCAATAGGGATCTATCTCTCTCTCTCCCAACCCCTCAATGTTAAGAAGCAAGCAAGAAAAACAAAGCCAAGTATACACTGCATGGAGACTTATCTCGTTTTGTTTTTACTTGCAG
Seq C2 exon
AACTCTATGAAATCTTCTTATCTAGAGCTAAGGAACGATGGAAAAGCTTCAGTGAAACAAGTTCTGAGAATGATGTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538:ENSGALT00000010562:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCCGGAGAGTTCGAGAG
R:
TCTACATCATTCTCAGAACTTGTTTC
Band lengths:
182-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]