GgaINT0043103 @ galGal3
Intron Retention
Gene
ENSGALG00000009588 | DMBT1
Description
NA
Coordinates
chr6:32921198-32922240:+
Coord C1 exon
chr6:32921198-32921221
Coord A exon
chr6:32921222-32921928
Coord C2 exon
chr6:32921929-32922240
Length
707 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATT
5' ss Score
5.99
3' ss Seq
CTCTCTCTTCTTTTCCACAGAGG
3' ss Score
11.25
Exon sequences
Seq C1 exon
CTTCTACTGGAACTGAAATACCTG
Seq A exon
GTAATTTCAATTTCATACTTATTCAATAGTTTCTATCTAGAATTTTCTAAAGCATAAGCAAGTTCTTGCTAAGATGACTACAAATCATGTTCTGACTCGGACTTTTGGAGCCTGAAAAAGTCTTCATTGGACTAGGGTGTTTTAAATACATGGTTATATAAAAGAAAAGGCATTGGATCAATCAGTATTTCAAACATTCCTCCAGTTGTATGAAGCTACATAGTTATTAGAAAGTCATGGCCCTGAGGTGCTGCTTTAGCTTGATTAACCTCTTTGTCAACTCGGTTTCTATGAGTAAAACTTTGATTCTGTTCTATTCATTATAATATACTGTCATTAATAAATTGATAGATAAATGCCCACTAGTGTTTATCTAATGCAGGTTATTTCATTATTTGCTATTAATCTCATCACAGGAATTTAACTGGGGATGAAAACCTGGTTTAGACAGCTATGAACACTGCCAAGCCCTAGCAGCAAGCCTTGGTTCCAGGGGTGAACCAGGAAACAGCACGAGTGCAAACACAGTGACCTGAGGTCAGCTGGCACTTATCAGTGCTGTCCTCACTTTCCCTGGGAATGAAAGGTCACGACAGAATACAATAGCCAGAGGAACATATTGAATCAGCTCCAGAACTACTCCAGAATTTTAGCTTTGCAGTTCAGGAGCCTTCAGTCTCTTATCTCCTCTCTCTTCTTTTCCACAG
Seq C2 exon
AGGTGTCCATGAGGCTGATAAATGGCAGAAACAGATGCGAAGGGCGGGTCGAAGTCTACTATAAGGGAAGCTGGGGGACCGTATGTGACGATTTCTGGGACATAAATGATGTGCAGGTCGTGTGCAGGCAGCTGGGATGTGGAGATGCTCTCTCTGCACTGGGAAAAGCACATTTCAATCCAGGGGCAGGGGACATTTTCCTGGATGATGTGCAGTGCCATGGAAATGAATCCTACCTGTGGGAATGCTCTCACAGAGGATGGGCCACACATAACTGCAGGCACAGAGAAGATGCCGGTGTGCGTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0053013=SRCR=WD(100=96.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]