BtaINT0008073 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N2X6]
Coordinates
chr26:42954856-42958831:+
Coord C1 exon
chr26:42954856-42955173
Coord A exon
chr26:42955174-42958513
Coord C2 exon
chr26:42958514-42958831
Length
3340 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
GGGCCCCTCTCTGTCTGCAGGGG
3' ss Score
10.13
Exon sequences
Seq C1 exon
GGGACTGGCCGGAGCTGCGGCTGGTGGGCGGCTCAGGACGGTGCTCAGGACGCGTGGAGGTCCTGCATGAGGAGGCCTGGGGCACCGTGTGCGATGACCTGTGGGACCTGAATGAAGCTGAGGTCGTGTGCCGGCAGCTGGGGTGCGGTCAGGCCGTGTCCGCCCTCGGGAAGGCCCACTTCGGCCCAGGCTCTGGAGACATCTTCCTGGACAACCTGCAGTGCGCTGGGGCGGAGCGCCACCTGGGCCAGTGTGCCCACTCGGGCTGGTCGGAGCACAACTGCGGCCACCACGAGGATGCTGGGGTCATCTGCTCAG
Seq A exon
GTAGCCTCTCTTCCTCCTGCCAGTCACCACCCAAGTGCCTCAGGACCACCCTGCTAGAATTCAGAGTCAGCCAGGGATGAAGACGGGCTTCCCTGGTGGCTCTGTGCTAAAGAACCTGCCTGCCAAGCAGGAGATGCAGGATCAATCCCTGGGTCAGGAAGGTCTCCTGGAGAAGGAACTAGCAACCCACTTCAGTATTCCTGCCTGTGAAATTCCATGGACCTGGAGGCCACAGTCCGTGGTTGCAAGAGTTGGACAGGACTTAGAGACTAAACCGCCACCACCAGGGTTGAAGACAGGAATCTCAAACATGTAGCATTTGATGTTTGCTTTATCCCTTTAGGGCTTCCCTGTGGCTCAGCTGGGAAAGAATCCACCTGCAATGCGGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGCGAACGGCTGCTCACTCCAGTATTCTGGCCTGGAGAATTCCATGGAATGTATAGTCCATGGGGTCGCAAAGAGCTGGATACAACTAAACAACTTTCATTTCACTTCACTTCACTTATCCCTTCTGAGTTGGTTGAACAGATAAGATTTCAACTGATTCCCAGAATAAAATCTTAAAATTTTCTAATTTGAGAGTAAGAATTACCAAAGGAATGTGTGCTTTACTGCACATAGACATATGAAAAAAAAAACATGATTAATTATGGGGATTTTTAAAGAGTATTTCTAAATATCTTTGTTTAAAGGGGCAGCCAATGTAGTAAATCTAAGGAAGATTGAGGAGCTGGGCAAACTCGAGTCTGGATCTCGGAACTGGTAATGATACTCAGACAGCATTTGATCAACTCTTAAGCTCTTGGAGCCTCAGTTTCTTCATCTGTAAAATGAGGAGACTGCTTGCTTTCTGGCAGGATTGCTGAAAGGGCTCCTTCAAGCTGTCTTTTGGATAGTACCTGCAGAGTATCAGTACCTGACAAAGGGCTGCATTTTTGGCAGTTTTTACTACCATTTTCCTCATTCAGTCATCTAACACCAGAGAATCAGTAAACTAAAATGGCTGATTTTAATTGCCTTGAGACAGCTTTTCCAAAGTACTTTGGGACAGAGACTTCCACAGCGGTCTAGTGGTTAAGACTTCACCTTCCAGGGCAAACGGCGAGGGTTCAATCCCTAGTGAGGGAGCTCCGATCCAACATGCCTTGTGGCCAAAAAACAAAACGTAAAACAGAAGCAGTATTGTAACAAATTCAATAAAGACGTTAAAAATGGTCCACATTAAATATATATATATATATATATATATATATATATATATATATCTTTAGGTGTGAACAGTTAGAAGTGAGTTAATCACCTCTGGAAGGTCTAGTAACAGCCCTTTCCAATAGCGAGATATCTCTGTAAACTAGCAGCTGTAATACCTGGTGTGATTCGAGAGATTTGGTAAGTAGAACTTGAAAGAGCACTTGTTCATAGACATGCCACATGAGACGGAGTTGGTGCCTGGAGCTTTTAACTGGTTGTTGTTGTTCTGTCACCAAGTCATGTACAATTCTTTGCAACCCCATGGACTGCAGCATGCCAGGCTTCCCTGTCCTTCACTCTCCCAAATTCATATCCACGGAGTCAGTAGTGCTATCTAACCATCTCATCCTCTGCCACCCTCTTCTCTTTTTGCCTTCAATCTTCCCCAGCAGCGAGGTCTTTTCCAGTGAGTCAGCTCTTTGCATCGGGTGGTTTAACTGGGGCACGTCTTTTTTTACTTAATTTATTTGTATTTGCTTGGCTGTGCCAGGTCTTAGTTGTGGCACTAGGGGTCTGAAGTCTTCCTTGAAGTGTGCTGAATCTTTAGACATGGCATGCAAACTCTCAGGTGCAGAATGTGGGATCTAGTTCCCTGACTAAGGACTGAACCTGGCCCCTTGCACTGGGAGGATGGAGTCTTAGCCACTGGACCACCAGGCAAGTCCCAGGAGGCGCATATTTTAAAACACTGTCTTGTTTGCTGGAGCATTCACTCACCCATATGCTTACTTGGAGGTGTCTTATCTGTGGCACATCCAACCCAGTCACAGCCTCATGGGGTGTTTTTTATTCCTAAGTTTCAATGTACTGGGGAATGACTGTCCAAATCTGAAGTGTGGAGTGTTAGTCACTCAGCTGTGTTCTCAGACTCTTTGTGATCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGAATTCTCTAGGCAAGGATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCTTCCCGACCCATGGATTGAACCCATGTCTCCTGAACTGCAGGCAGATCCTTTACCATCTGAGCTACCATGAGATGCCCTCAATGTGAAACTCATCTGCTACAAAATCAGGAGTCTAGGTCATATCATCCCAAATGTGTGCATCCATCTGACCATTTTCTCATAACACAGTAACCAACCAACAACCAGCAAGAAACTTCCTATATCTATAGCCGAATCTGTTTCTCCCAATACTGTGATATTTACAGGGACTCATTTTTCCCATATCAGATGAATAATCATTTATAAGGATGTAAGGAAAAATTTTGCTGTTGGTTATGAAAGTCAGGATTTCAGAAAAAGACTGACATATTTTTTCTCTACGTGAACAGATGCGGGAGACTCATCTAACAGCTCAGGTAGGTCACGCCTTTTTTTTGATGGGACTTGAACATCAGCTCTTTGTGATTTATTGCTGGGCTCAGTTCATCCTTTGTCTAAGCTCTGATATTTTCATGGCTTTAAGATGCCATTTAAAAGTGTTATTTGGAATTACTCCTTTTGATATCGTTACAGGTGATGGCATCTCTGTGTGTGTGGGTTAGAGACACATACGTGCAGGTGTGAAATGGCACTTCAGGGTCTTTTTGCAAAAGCTTTCCCCTTACTCAAAGGCATTTCCCTGAGTCTGTCCTTGACCGGGTCCTTCTCAGTGTTTTAAGGGGAGTCTTGCAGCCGTACCCCATCACTCTCTTGAGCGAACCCTGGTCTTTCTTTACACGGCCTTGTACTGGTGTGAGAAAGCATTACACTCGCGTCTGTGTTTAATTAACAGACTGCAGGCTTCCTGAGGCAGGAGACATACCTCTTTGATTTGCAGCCGTATCATTAGAGCTTAAAATGAAAGGCAGTCAGTTTCACTTCGAACACTGTTGAAGTGACATTACACTGACTGAAGGCCCCACAGTCTGAATGCGACTCAGACACACATGAGAAACGTGAGGGACGGGCCCCAAGGGTCAAGACAGGGCATGTCCCCGCACACCGGCATTGCCCGCTGGCCTCCTGGGGACTCACGGGCCCCTCTCTGTCTGCAG
Seq C2 exon
GGGACTGGCCGGAGCTGCGGCTGGTGGGCGGCTCAGGACGGTGCTCAGGACGCGTGGAGGTCCTGCACGAGGGGGCCTGGGGCACCGTGTGCGACGACCTGTGGGACCTGAACGAAGCCGAGGTCGTGTGCCGGCAGCTGGGGTGTGGTCGGGCCGTGTCCGCCCTCGGGAAGGCCCACTTCGGCCCGGGCTCTGGAGACATCTTTCTGGACAATCTGCAGTGCGCTGGGGCGGAGCGCCACCTGGGCCAGTGTGCCCACTCGGGCTGGTCGGAGCACAACTGCGGCCACCACGAGGACGCTGGGGTCATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039755:ENSBTAT00000066099:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=91.6)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]