MmuINT0005284 @ mm9
Intron Retention
Gene
ENSMUSG00000006204 | 5430419D17Rik
Description
RIKEN cDNA 5430419D17 gene [Source:MGI Symbol;Acc:MGI:1918645]
Coordinates
chr7:138378558-138381797:+
Coord C1 exon
chr7:138378558-138378611
Coord A exon
chr7:138378612-138381479
Coord C2 exon
chr7:138381480-138381797
Length
2868 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
TCTCTCTCTCTCTCTCCCAGGAG
3' ss Score
12.37
Exon sequences
Seq C1 exon
AATTCTCAAATACTCCCAGTGGGAACATCTCACCTCTTCCCGTATCTGACTCAG
Seq A exon
GTATAATTAGCCTTCCCATCACAATCGCTAACTGATTTTTCTAAAATGGGCAATGAACTAGACAAGCAGAAAAAGAATAAGGCACTTCTGAAGCAGGGGGTGCAGAGGGCCTTAAATAGATAGACATGTTGTTTGCCATGAGTAGATTTCAGGGGAATCCTTTTGATTTTTTTCTGCTTTTAGTTCCTTCACTGATAAGGTTGGCAAACTAACACCCTGCTGTAACCTTGAGCTATCATAAAAGTGACACTTGAAAAGTTCTCACAAAAATAACAAAGTTTTATACAAGATTCATATTTTTTCTGCATTAAGCTCAAACAGAGTTGTGCATGTTTCTGACATAATAGATAGTAATTAGTGGATTTTGTATGCCCTAAATGCTATTGACAACCCCTTTGACTTATCACACTCCAGCTGGAGTAGACTAGTTGGCTGACTCTAGTAGGTTTTCTTTATCTAATAGAATAGAGGAAAGGGCAGCTCAAATATCTCATGGAAAGGTATCATGCTCCCAGATGACAACAGTCACCAAGTCTCTGTCTGCAGGGGACTGGCCAGAGCTGCGACTGGTGGGTGGCTCCAATCGATGCTCAGGGCGTGTGGAGATCCTCTACCAGGGAGTCTGGGGGACTGTGTGTGATGACCTGTGGGACCTGAATGAAGCTGAAGTCATATGCAGACAGCTGGGGTGTGGTCAGGCTGTGTCTGCCCTTGGCAAGGCCTACTTTGGCCCTGGTTCGGGAGATATCTTTCTAGATAACCTCCAGTGTGCTGGGGTGGAGCACTTCCTGGGCCAGTGTGCCCATTCTGGCTGGTCAGACCACAACTGTGGCCACCATGAAGATGCTGGTGTCATCTGCTCAGGTACTCTATCTAAGTTTCTCATTTGGCAGTCATCATTAGCAATGTGTGCTTTGCTGAAATATGCAAAGAATGGGTCTGAATTTGGAGGCAGTAGCCTGCTGCAGGGAGACCAGGGCTGCATGGGGCTGCCTCTCAGAGCTGCAGTGAACTTCCAGACTGCATCTGTGTAGCATCTACATTTTCAGATCTTCACTTAGGAAACTAGAAGACTGACTGATATTTTTTCAGAAAAGAAGTTTTTGATGAAGTACTGTCTTACTAACTAACAAAGAAATGTACAACTCTTATTCTCCTTAGTCATAATATGGAGGGAATTCTGGGAGATGACTAATTTCAATTGCCTGTGTCTTTTTTTTTTTTAATACCCTGACTCATGCATGAGTAGTTATGAGTAAATAGGTTCCCTCTGGAATATCTACAGCTAGTCTTGTTTGACAATGTGATGTCTTTAAGCAAACTGCTACAATTGCAGATGTGACTCCAAAGAATCAGGCACTGTTAATAGAATGGGTTTGCAGTCCACAGAGCTGCCCACACAGATTAATACATGTTAGTAGTGTATCTATCTTACCAGTAAATACACTCAGGCTCCTGGGAGCAGACACTATCCAAACCACAGCCGTCTACATCTGTCCATTTTCTCACTTTGCTGTAAACTAACACCCCAGACAGAAGCTTATTTTAGACCTACTGATAAATTTGTTTTTCCTGGTATCATGTTCTTTAAAGGGATTGATAATAGATTAATCAATACAAATGAGAGTATAATTAAACTTTATCTTCTGTTATTAAAGCCTGGAGTTCCTCCAAATACCGACCTATTTGTTTTTCTTACTTACAGATGCTGAAAAACCTCTGTCTGATGTTCCAGGTCAGTGGTGTCTTTTATAAATGGGAGTTAAATGTCAGCTGCCTTTGACTTTGTCTTTGGACTGTTTGGTCTTTCACCTCTGAGTTCACTCCTTTCAGCTGCAAATCTGTTACCGAATGACATGTCTGGCTGTGATTCTTCTCACTTTTTCATGTGTGATGTGTTGTATGTGTTGCATGTGTGTTCATATGTGTATCCATCATTTGTAAAGGATTCACGTTTGGTCATTTTCCTCACTGGCATAACACCAAGAGAAAAGGTATACACCAAAGCGACATGGCTCTTTAGGGCTCCTTGCCTGTACGCTTCTCTCTGGTCCAAAGGATGGTTTTTGGTTTTTGTTTTGTTTTTGCTTGTTTGCTTTTGTTTGTTTTTTGTTTTGTTTTGTTGGCTCTTCTACTCATTAGCTCCTTTTTACATTTCTTTTCTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTCTTTCTTTCTCCTTTTTTTTTGAGACAGGGTTTCTCTGTGTTGCCCTGGCTGTCCTGGAACTCACTCTGTAAACCAGGCTGACCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGCCATGCACCACCACTGCCTGGCATCCTTTTCACATTTCTAAAGGGTGTCATCCAGCATCTCTTCTCTGCCATTATCCTCTAACATCCTGTCTTTGCTTTTGTTGTATTTATCACATTGTGGAATGGTACATTTTACTGTGTTTATATTTCACAAGTGAATAGACTCAGGTTCCCAGAGGGTCTATGGCTATACAATCCATGGCTAACACAGGAAACAAAAAAGGCTGCCTAAACAAAATTTGCTGCAGCCCCCACAAACTGAAACTCAGAAATCCATGATAAACATGAGAGTGAATGAATGCTCAAAGTACTGCAGGATCCCAGGTGAAGGTATTGGGGTGTGAGGACTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAG
Seq C2 exon
GAGACTGGCCAGAGCTTCGCCTAGTGGGTGGTTCCAGTCGGTGCTCAGGACGAGTGGAAATCCTCTACCAGGGAGTCTGGGGCACCATATGTGATGACCTGTGGGGTTCAAATGAAGCTGAGGTTGTATGCCGCCAGCTAGAGTGTGGCCAGGCTGTTTCTAGCCTTGGTGAGGCTTACTTTGGCCCAGGCTCTGGAGAAATCTTCCTAGACAACCTTCAGTGTTCTGGAATGGAACATTACCTCGGCCAGTGTCCACATTCTGGATGGTCTGAACATAACTGTGGCCACCATGAGGATGCTGGTGTTATCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006204-5430419D17Rik:NM_175166:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: