GgaINT0044048 @ galGal4
Intron Retention
Gene
ENSGALG00000013090 | LOXL4
Description
lysyl oxidase-like 4 [Source:HGNC Symbol;Acc:HGNC:17171]
Coordinates
chr6:21801649-21802146:+
Coord C1 exon
chr6:21801649-21801874
Coord A exon
chr6:21801875-21801962
Coord C2 exon
chr6:21801963-21802146
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGACTGTTCCTCATGCCAGGAT
3' ss Score
7.36
Exon sequences
Seq C1 exon
CCTGAGAAACCTGAGCCAGAAGAGCAGTTTCTGGGTGCACCGTGTGCAGTGCCAGGGCACAGAGCCCCACCTGTCACGCTGCTCCACACGGCTGGCTCCCCCAGCCCCCAGCCAGAATGCCTGTCCCCGTGGCATGCATGCCATCGTCAGCTGCGTGCCCGGCCCTGCCTTCCAGCAGAACAAGAACAGGGACAAGAAACCTCCCCGCAAAGCCTCCGTGGGAAAG
Seq A exon
GTGAGCCCTGGCACAGTCCCATGCCCTAACCCCAAGGCAGGCACCCAGGGCCGGGCAGCACCCACTGAGTGACTGTTCCTCATGCCAG
Seq C2 exon
GATCTTCCCGTGCGCCTGCGAGCGGGTGCCCATGCTGGAGAGGGCCGAGTGGAGGTGCTGCGCCACGGGCAGTGGGGCACCGTGTGCGGCCGGCGCTGGGACCTGGCAGCAGCCAGCGTGGTGTGTCGGCAGCTGGGCTACGGCACGGCCAGGCAGGCACTGCTGGGAGCACAGATGGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013090:ENSGALT00000021368:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.177
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(44.8=68.4)
A:
NA
C2:
PF0053013=SRCR=PU(56.1=88.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGAAACCTCCCCGCAAA
R:
CAGCTGCCGACACACCAC
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]