MmuINT0091858 @ mm9

Intron Retention

Gene

ENSMUSG00000025185 | Loxl4

Description

lysyl oxidase-like 4 [Source:MGI Symbol;Acc:MGI:1914823]

Coordinates

chr19:42678622-42679516:-

Coord C1 exon

chr19:42679297-42679516

Coord A exon

chr19:42678809-42679296

Coord C2 exon

chr19:42678622-42678808

Length

488 bp

Sequences

Splice sites

5' ss Seq

GAGGTCAGC

5' ss Score

5.66

3' ss Seq

GCCGGTTCTCTCCCCTTCAGCAG

3' ss Score

7.95

Exon sequences

Seq C1 exon

GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG

Seq A exon

GTCAGCCCCCAGGGTCCTGACCAATCTGCAGGTGCAGATCCCGCCCAGCAGTGCCCTGCTCAGTGGGGTAGAGGAGAGAGGAGCCATAAGGGGGGGGAGGAGCTGGACTCCTTGGGAAGTTTTTTTTTTTTTAAAGGAGGTCATTTATCATCCTCCCATAGATGGAAAGTTGACATTATTTGCCATGGATAGAAGGCAACCGTGAAAAGAGTAATTAAATTGTAGCTGCAACCCACTGAGGGTGAAGGCACTGAACCCAAGCCTGGTCTTTTTAAAAAGTAGGTGAGAGCGCTAGTGAGCCCCGCTGCCAACACGCACACGCACACGCACACGCACACTCACACTCACACCAGTGAAGAAGCAGAGGTTTAGAGTTAGTTGTGGGAAGCCAAAGACAGAATTGGAACCTAGGCTTTGCCTCTGGCCGGTGAAGCTTACAGGAGCCCCTCCCTGAGGTCCACCCCTGAAGCCGGTTCTCTCCCCTTCAG

Seq C2 exon

CAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGTGCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGTCGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000025185-Loxl4:NM_001164311:6

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features