GgaINT0044282 @ galGal3
Intron Retention
Gene
ENSGALG00000007014 | PYROXD2
Description
NA
Coordinates
chr6:23676052-23676340:+
Coord C1 exon
chr6:23676052-23676186
Coord A exon
chr6:23676187-23676267
Coord C2 exon
chr6:23676268-23676340
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CGGTGCCCTCTCCATCCCAGGAG
3' ss Score
8.15
Exon sequences
Seq C1 exon
GCCGTGTGCCGCGTGCTGCTGGGATCTGATGGGCAGGCGCAGGGCGTCGTGATGCAGGATGGGACGGAGGTGAGGAGTAAAGTGGTGTTGTCCAACGCCTCCCCCCAGCTCACCTTCCTGGAGCTCACCCCCCAG
Seq A exon
GTATGGGGCCATCATAGCACTCGGCACAGGGTCACACCCCAGCTGGGTCACCCCATCACCTCGGTGCCCTCTCCATCCCAG
Seq C2 exon
GAGCGGCTGCCAGAGGACTTTGTGCGGCGGATCCAGCAGCTCGACACACGTTCCCCTGTCACCAAAATCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014:ENSGALT00000011349:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0099613=GDI=FE(48.4=100)
A:
NA
C2:
PF0099613=GDI=PD(12.1=44.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGCTGGGATCTGATG
R:
GTGTGTCGAGCTGCTGGATC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]