RnoINT0121126 @ rn6
Intron Retention
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261967655-261969142:-
Coord C1 exon
chr1:261969008-261969142
Coord A exon
chr1:261967728-261969007
Coord C2 exon
chr1:261967655-261967727
Length
1280 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACGGAAGTCTCTCCCTCCAGGAG
3' ss Score
6.38
Exon sequences
Seq C1 exon
ACTGTGGCTAAGGTGCAAGTGAACAGCGAAGGCCGTGTCCAAGGGGTCGTGCTGCAGGGCGGCGAGGAGGTCAGGAGCAGAGTCGTCTTGTCCTGTGCGTCGCCACAGGTCACCTTCTTAGAGCTGACACCACAG
Seq A exon
GTGAGGCGGGTCAGGGGAGAGATAAAATGTCTGCCGCACAGGCCTTGGAGTGTGGTGTGGGGAGCTCGGATTACATCAGGCAGGATGGAGAACTAAGGTTTATCTGAGAAAGTCTGCAGCTTGCAAACAGTAGAGAAGCCTCATGGGTTATGGGAAGGTCCACAAAGGTGAGGGGACCGAGAACACACAGCTGGCAATAGACTAAGCCAGTGCCAGGGCCTAGGTCTGGCTTATAATTCTTACCACTTTTCTTCTACCGGGATTTGGATTTCTCCCCTTGCCAACTTGTATTCTACCATTGGCCAGTGATCTATTGCAATATTAATGCTGGGAATGGAGACCTGGGAGGTTTGGGTTTTTTTTTTGTTTGTTTGTTTGTTTGTTTCATTTTGTTTTGTTTTTAGCACAGTAATAAAACTTCTGGGCAGATAAGACCTTCTCTCACAGGCAGAGAAATCTGTTGCTCTTGGCTGGTTTAGCTGCAGTGTGTCACCTGCAATGGTTGTGGCTCTGCTGGTCTTGAGTGGACTCAGTCGTTTGGGATCTGGCTGGCTGCAGCTGGTCCAGGACAGACTCTGAGGAAAGACTCATGTGTCCCTCAGCCTCTGGTGCAGGGGCTCCAACATGTCCTCAGGCCTGGCAGAGGGCAACAGCCGGCAAATTCAGCATGCTCCATTGTTAGACCTGGGCCCGTCTTATTTGCTGACATTGGCTAAATCCAGTCTCCCAGCCAGTCCAGGGTCACTGGGTGGGGGTCGGGTGGGGGTGGAGGAGGACTGTGGAGAAACATGGGAAGGGTCTTACATCCGGGAAGGGCTCAGGGCTTCGGAACATTGCAATTGGCTATGCCTCCCCTGTCCCGGAAAGATAAGATAATGCATCTCTGAGCTGGCGTTCTTACCCATATGTAGGCCTGCTCTTGGGGGCAAAGCACCACTTACTGTCTCTGAATATTTCCACTAACGACATCCAGCAGCTCCCAATGCACATTGTGAAGCAATTCTGAAGCAGCGAGAGCCATGGCCAGCCAGAGTAAGGTGCATAAAAATGTCTATCCCTGTCCCAAGCAGGACACGGAGAGAGCTACTCCCAGCCAGGACAGTGGGTCAAATGCAGACGAAGACATTGCTCAGTCTAAATTAGGAGGCTCCGGGAAGCTCTCGCAGAGGAAGTATGGGGCTGGCTCTGAAGGAAGAAGAGGATGCCTTCAGACAGAGGTTGAAGGGCTGGTCTGAACTGCTTGGCTACTGCAGGCCTTTCACGGAAGTCTCTCCCTCCAG
Seq C2 exon
GAGTGGCTTCCTGGGGCCTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCCGTTACCAAGATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807:ENSRNOT00000021257:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGCTAAGGTGCAAGTG
R:
TTGATCTTGGTAACGGGAGACTG
Band lengths:
206-1486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]