GgaINT0044467 @ galGal4
Intron Retention
Gene
ENSGALG00000008905 | HABP2
Description
hyaluronan-binding protein 2 preproprotein [Source:RefSeq peptide;Acc:NP_001264308]
Coordinates
chr6:26986370-26986988:+
Coord C1 exon
chr6:26986370-26986515
Coord A exon
chr6:26986516-26986853
Coord C2 exon
chr6:26986854-26986988
Length
338 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
3' ss Seq
GTTGTTTTTCTTGTCTTCAGCAT
3' ss Score
7.99
Exon sequences
Seq C1 exon
ACACGGAGCAGAAAATCTCCAAGTGGCCCTGGGAAAGCAAAACCTCAAGAGGAGAGAGCATCAAGAGCAAATATTTGATGTGGAGAAGGTCATCATGCATCACAGATACAGACTGGGTGATGATGATGTCCCATACAATGATATTG
Seq A exon
GTAAAGCCTTTTAATTTAATTAGTTGTCTGAAAGCCCCTCCCTGGAACTGAGATCAGTATAAAATACCCCTCTGAGAATGTGTACTGGAAATAGTTAGGCCACATTGTGACTTACACCTCTATGAATCATTGGAGGATGAATCATGATGTGCAGAGAAAAAATCGTGTGGGGGTAGTAAAAAAATAAAATAAAGGGATAGGTTCAGCATGTAGTCAAGTTCAAGCTGTATGTCAGTTGCATGGAGCCTTGCACGGAGTTGTGGTACAGACTGGCAGTGATGGCTAGGGATTTAAACCAGTTACCAATACTTTTTTGTGGTTGTTTTTCTTGTCTTCAG
Seq C2 exon
CATTACTTAAGTTGAAGCCGATTGATGGTCAGTGTGCCATAGAAACCAAGTATGTGAAAACAGCATGTCTGCCAGATTTTGAATTTCCTGTTGGGACTGACTGCTTCATTTCAGGATGGGGCGAGACGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905:ENSGALT00000033102:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGAGCAGAAAATCTCCA
R:
GTCTCCGTCTCGCCCCATC
Band lengths:
279-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]