HsaINT0074006 @ hg38
Intron Retention
Gene
ENSG00000148702 | HABP2
Description
hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4798]
Coordinates
chr10:113583216-113584282:+
Coord C1 exon
chr10:113583216-113583358
Coord A exon
chr10:113583359-113584147
Coord C2 exon
chr10:113584148-113584282
Length
789 bp
Sequences
Splice sites
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
3' ss Seq
CTACCTCTCTCTCCACCTAGCAT
3' ss Score
8.91
Exon sequences
Seq C1 exon
CATAAAAACCAGACATCTAAAGGTGGTGCTAGGGGACCAGGACCTGAAGAAAGAAGAATTTCATGAGCAGAGCTTTAGGGTGGAGAAGATATTCAAGTACAGCCACTACAATGAAAGAGATGAGATTCCCCACAATGATATTG
Seq A exon
GCAAGTTCCTCTTTCATGGCTTTCCTGAGGGTCTTGTCCTGGGTGGATTTCTCTATGACCAGAAAGCTGAAGTTTGGTTCTAGAAGGTGCTCTTGATTGTTTTTGGTCCCTGTGGACCCTGTGCGGTAGGGAATGTATTCCAGGGATTTTTAGTTTTTGAGGGTATGTGCAAATGTAGATAAATGGGCATATGCTCTTAAACTGAGGGGAAGCAATGCTAGGAACATTGTGCTATGGAATAGGCTTGGCCTGGAATCCCAGCTTCCCAACTTTATCACCAGGAGACAGCTCACCTCCTGAGCCCTCTTTTCTCTTCTATGAAATGGAAACACTGATGCACAACTCTCAGCTTCCTATGTGTCAGGAGACACAATGTGCTTGCAGGCATGCCTGGCCCCTAGCCCCTGGCAGGTGCTCCAGTGCAAATGCAATGACGTTCCTAGCTACCAGCTGCTCAGTTCTGTATCCCGTTTCCCTTTTCATGAGACACCCCCCCACCTCTCTCTCCTTCCTCAATAGCTTTTTTCCCCTCTAATGGCCTGTTTCTTAAAAAATGGATTAGAAATGATTTCAAAGTCAATTGTCATTTCTTGACATGACTCTCGCCCTGAAGTGTTACTCCTTCCTGGGTGGAAGTTCAAAATATGAAATGACCACGGAAGAAGATTTTCAGGCATGGTGGGGGCAGGTGGGGCTTTGCTGTGGCCACCTTCATGAGCAAGTTGGAGCTGGTGCTTCTCTGACAAAGAGGTGACATCGCATCCATTTTCTACCTCTCTCTCCACCTAG
Seq C2 exon
CATTGCTCAAGTTAAAGCCAGTGGATGGTCACTGTGCTCTAGAATCCAAATACGTGAAGACTGTGTGCTTGCCTGATGGGTCCTTTCCCTCTGGGAGTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148702:ENST00000351270:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAAAAACCAGACATCTAAAGGTGG
R:
CTGTTTCTGTAACACCCCAGCC
Band lengths:
278-1067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development