GgaINT0044673 @ galGal4
Intron Retention
Gene
ENSGALG00000004345 | OIT3
Description
oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
Coordinates
chr6:10808940-10812857:-
Coord C1 exon
chr6:10812442-10812857
Coord A exon
chr6:10809040-10812441
Coord C2 exon
chr6:10808940-10809039
Length
3402 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TATCCCTCTGTTTTCCTCAGCTG
3' ss Score
9.28
Exon sequences
Seq C1 exon
GTCATAAATGACAAAATCATTGCCACCAATCTGGTGACTGGCTTGCCAAAGCAGACTCCAGGAAGCAATGGGGACATCATTGTCCGCACCAGCAAGCTGCTGATCCCAGTGACCTGTGAGTTCCCGCGCCGGTACACAATCTCTGAAGGCTATGTGCCCAATCTCAAGAACTCACCCTTGGAAATAATGAGTCGTAACCGAGGCATCTTCCCCTTCACCCTTGAGATCTTCAAAGATAAAGACTTTGATGAACCCTACAGGGGTGCTCCTCCCACCCTCAAGCTTCGGGACTCTCTGTACTTTGGGATTGAGCCCTTGGTGCATGTCAATGGACTGGAGACACTAGTTGAGAGCTGCTTCGCCACTCCCACCTCCAAAATCGATGAGATCCTGAAGTACTACCTGATTCAAGATGG
Seq A exon
GTGAGTTCACTGTTCCCTTGCTTGTTGGCTGTTAGATGGGAAGTGGCAGTGGGACTGGGTCACATCACCTGTGTGACACAGGAAATGCTGTCACCTCTCAGCAGTGTTATTTACCATGTTCTTAGCAGTCACCAGCAGCCAGTCTGTCAAGCTGAAACCACCTGTATTATCACAGCAACTGGGAGGTAGTGAAATAGGCTTCCTCAAGCCTTTACAGGGCATCTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTAGCTTGTGGATAATTGAGTTGGCTCCTATAAATGAGATTCTTGCCGACAGTCCTCTCTCTGCCAGCCTGCAAAGCGCCTGCCCATTTGGCAGAACCCCTCTGACAGTGTGTCATTGCCATGCAGCTGCTTCAGGTTCTTAATTATTTTCCCATATTGGCCTTCCTATAGCATGTGCCAGAAGACTCCCTGGCTCATTCTGGCTGGAGCTCCGCAAGCTCCCTTTGCTTTGCTCTTTCTCTAATGCCTATCAATCACTGCAGTGGATATAGGGTCCCTCTGGCTGTAATTTTCTAGAGTGTTTGGGGATAGTGGTCATTCCAGGATGTGCTAATGAAAAAAAAAACTCAGGGTGGGTCTCTGGATTCACTGGTCTCCTTGGGATGGCTTGTAAGTCAGCAGTTGGGATCTACTATGGCTTCTAAGGTAACCCCTGTTCAGATGCTAACACGACAGTGCCATGGTGCTGTTCAGGGAATGTTTGCATCCATTATCTGACAGTGTAGCTAGACAGCATGGGAGAGATCACAGTTAGGAGCAAGTCTGCCGTACTCTAGGCAGGAAAGTACAGCCAGATACAGACTCAAGTGTCATAGCCCATCACTTAAGGGATTGGGTTTATGTAAGTCCTGGATTCTGTCTGCCAAACTGTTTTATAAGAAAAACAATTATTTCCTTGGCTGCCAGGCTGAATTGTCCACTGTCACAGCTGATGACAAGTCCTGTACAATTGCCTTGTAGCAAAAGTGTCCTGCGGAGTGCTGCACACAAAGGTTCTGTTTCCATTTCTCTTTCACAAAGGTTTCAGCATTACTTTCTCTCTCTCTCTAGTCCAGGCTGCAGTTCTTCAGCTTGTGACATTTATGAGCGGATTTGTAATGGAAAGATTGATTTATTGTCTCCCTGACTGTCCCTGTGGACCCTCATAGGCTCAGGGCTCCAAATAGTCCTTCATTTCCCACCATGAGTGCAGATGATGAGCATTTAAAATAGTGGCCAAAACCTGAGCTGAATAGAGAAGGGAGAAAATGTGATCTCTTGAGTTTTTCACAGCAGTGGCCTGGAGTTTTACCCAGCAAGAAGCCAGGATGTTTCTGGTAAGGCCTTTACCTGCTGCTGGGGAAGGCGCGCCAGCAGCCCCTTTGGTACTGTTATCCTGTAGAGGGCATTAAAACTTCACCAAAGGGAAAAATGGGCTGGAGCAGGCTAACTGGAGCTTGTCCAGCCTGCTCAGCTCTCAGGCTGTCACTGCAGGCACCAGTGCCCCTAGCCAGCCCCCCACACTGGGCTAAATTTAAGTGGTACCGCTCACTTAGACCAAGGCTGATGGTGTACTCTTGAGCTAACTAAAGCTCTTTATCTCTCACTGTGCTCACAGCAATTAAAAAGTAAAATTAGCTGAATACACCGCTGATTTGTCTGTGTTCCAAACAGCTCTGCAATAACCTTGTTTCTTTCCATCAACCCAGCTCCAGAGGCCCAAGGCAATAAAGATGAGATTTTTAATTTGGTTTGATTGTGTAGGATCAGATCTGCAGGAGTTAACTGCAACTGAGACTTCCAGAGGGAATTGCTGTTTACATGTGAAAGGATATGCCTTAAACTGACAAATGGGAAAATTCTCTCTCCTGCTTTCTTCCCTGCTATTTCCCCCCATCTCCAGCTGGCAGGACGTGGGACCCCTCAGCCCCTCTGCCTGCACTGCTGGTGACCACTCTGGAAATCAAGATTTTCCCAGATCCCTCCTCAGGGGCTCTTTAATATACTGTGCTGCTGCTAGCCCAGCCAGCCCCAGAGCAGCTCTCCTGCTTCTGCTCTTGCCTTTCCTCTTTCCTGAAACCAAAATAATTAAAAGGCATTGACCAGTTGTGTGGGTGATAAATGCTACAGTTCTCTGGGGCATCCAGAACCAGGTCATGGCACTGAGGGCGGTCCCGTGTGATCTGGTGTGTTCACAGGCTGCAATTGATCTGAGCATTACATGGTTGAGATAGTTCTGCTGCACTGATTGTCCCATTGTGCCTGGGGCTGCCCTGTGTTTGCAGGCTGAGGAGGTTACTGTGGTCCCAAACACTCCTCCCAGTCCTGCAACTCACCCCACTAAGAGGGTCAGAGTGCAGCTCCCATGGCACAGCGTCTCTTTGTTCTAATGCAAGCACAATATGCACAGAAAAGGGTTGTTTTCCCCTTAGCCTGACCAGGATCACCCATTCTTCCTTCCAAACCTCCGTTCCTCTGCCCCTTCTCACCTCCTCAAGGCAGGAAGCAGGATCCAAGGCTTTTCTCCATGGCTAGGACATGGTATAGCCTCATGCACAATGCCAGGTGACTTGACCTTGTGACCTGGGAGCTTTCTGTGGTTCTGCAGTGCTTTTGTGGCAACCTGCTATAAGAAGGACTTAAGGATGTGGTAAGGTCTCTGTGCATCTATCCCTGGTTCCTCTTGTTTCTCCATGTTCCCCCTCCCTTCACCAAACTGTTTGGTTTCTTGCAACCGGACTGGAGAACCTGCAAAGAAACTGGGATTTGGGAGTTAGTTTGAAATAGTGTTCAACAGTCATCACAATTTATGTGCTCATAAACAAAGGACATGCTTCAGAGTTGACTTTGTCATTCTTCACAATTGAGTGCCTTTAGGAATGCTGCTTTTACATGCAGCTTTATCCTATGCAATGTAGTAACACCTGGCCTTTGGCCTCGAGGTGAAGGAACCTGTGTCATTTTCCTGAATGCACTCTGTTAATTTATTATCTCCCTGTGGATGACTTGAAGTTTGCCTCCCAGACAAGCTGACTTGTAGGCAGGGACATCTCTTCAGAAATTCAGAATGTTGCACTGGAAGATGAAATGAGGACAAACTTGACTGCAGCTCTCTGGCAGTCCCTCTGCTGAAGGGGCTGGACCACATCCTACCAGCTCTCTGCTGCTGAGCTGCTTTGTCTGCAGATGCTATTATCATCGCTGTTGTTTTTTCCCGTCATTCCTGAATTTTCTCCTGTGGCCAAAAAGGAAGTAACAGGAATGGCAGCTTAGCTTGAGAGGGCCAAGCCCTCCTTTACTTTCTTTGGTTAACTAGACTGGGATGGGTTTTCTTCTTCCTTTTTCTATTTCTGGAAAAGCCATTAAAGCCTATCCCTCTGTTTTCCTCAG
Seq C2 exon
CTGCGTTTCTGATGATTCAGTGAAACAGTACACGTCAAAAGACCATCTTGCCAAGCATTTCCAGGTTCCTGTGTTCAAGTTTGTGGGCAAAGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004345:ENSGALT00000006932:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(55.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]