RnoINT0105241 @ rn6
Intron Retention
Gene
ENSRNOG00000046365 | Oit3
Description
oncoprotein induced transcript 3 [Source:RGD Symbol;Acc:735082]
Coordinates
chr20:29011412-29013905:-
Coord C1 exon
chr20:29013829-29013905
Coord A exon
chr20:29011512-29013828
Coord C2 exon
chr20:29011412-29011511
Length
2317 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GCTGTCTCTCCTACTTTTAGCTG
3' ss Score
9.14
Exon sequences
Seq C1 exon
GAGCCTGTAGAGAGCTGCTTTGCCACGCCCACTGCGAAGGTGGACGAAATCCTCAAGTACTACCTGATCCGGGACGG
Seq A exon
GTGAGCACAGCGCTGCTTTGGTGTGGTGGGGGTCGTGGGGGTGGTGGTGATGGTGATGGTGATGGTGATGGTGTGTGTGTGCTGATATATATGTGTATATATATGTATATATGTGTATATGTATATATGCATATATAATATATTATAATATATTGCATATTATATAATATACTACAATATATACATATATAATATACTACTATATATACATATACATACATACACACATATATACATACATATATACATACGCACACACATATACATATATATATATATACACACACATACACACAAATTTGAGATACCATTGAATTTGGTCAGAAGCCAATAAATAGTTTTTCACGTGAAACACCAGTGGAATATCTAAGACGTTTGATGGGCCACTAGAAATGTCTGCCAGTCTCAAGAACATGATCAGAACTATAGACAGAGAATAGCAAATTGTTCACATGTCCCTAAGAGTAGGATCCACTAGCCTGCTCAGAGGGAGGAGCTATGTGCTAGGAGTCAAGGCAAAGGAAGGCTGTGGGAAGACACGGAAACAGCTTGTGCAGACTCCACTTTCAAGAAGTTTGATGGTGGGGGGCTGGGAATACGGCTCAGTATGTGAAATGCCTGCCCTATAGAGAAGACTTCAGATTCCTAGCATCCAGGAGCCCACTCACTCGGTTAAACAGTCTCCCCAATCCATGAGCTCCAGGGTCAGTGAGAGATCCTGCCTCAAAAAAATAAGCTGGACAGCAATGGAGGAAGATATTGACCCTTGACCTTCAGACATGCATGCATGAACCCACATGTTCACATGTGCACAGACATCATACAGACATGCATAGAAATGAGAAGTGAATTGGGAAGGACTGGAAAGGGAGGACATCTTGGTGGATTCTAGAGGGAAAGATGGAGATTTTTGTGGTGTCGCTGAAAGGCCCTAGATGTGTGATGGTGTCAGTGAACCCAGCTGCTTCCCTAGTTCATGCCAAGATCTCCTTCTTCCTTAGCCTAAATGACAGCTGGGAAGTAGCTCGGGCAGTGAGGAACTGCAGCCTCCTAGATGGGGAGGGATGTAGTGTGCAAACATTCCTTGGGCTTTGGTCCTTCCCTCCTCTTGTTGCCCAGTTCCTAGGTTTCCAGTTCACTTCAGCATCTTGCTTTTCTTCTCCCACAGCTCCCTTCTCACCCTGACCTCAGTGCCCCGAACAGAGGTTTCTGACCCTTAATGCGATGAGGTCAGCTTAGAAGCCATTTCTTACATTTGCTGAGTCAGCTGCTGTCTTATGCTGGGAAGTCTGCTCGTGTACTTGTCATATAGACTCTGGGTAAAGGACTGTAACCTTCGGTTCAGACTGTTCAAGCCAGCTCTGCTGTTTCTCCCTTGACCCTTAATACATATAAAATATGTGTGTGTGTATGTGTGTGTGTGTAGAGTGTGTGTGTGTGTGTGTATGCCTCTGTGTGTGCACACATGTATGTACATGTACGAAGATATAAAATAAGTGAGAATGGGTCAAATCACACCTTAGCTTCTTAGGAGAAAACGTGCATTGATATCCAAAGCCATGGCCTTGGCGTGTCAGCTAATGAGTCCTTTCCCCAGTTTACCATGGCAGGCACCTCATAGCAATGTGCCAAACTGAACCAAGATTAAGACACAGACTGGGGCTGGAGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCACAAGGCCCTGGGTTCAGTCCCCAGGTCCGAAAAAAAGAACTAAAAAAAAAAAAAAAAAAAGACACAGACTGTAAAATAGCGACTTGCTGTTACTTGTGGGAAGAGAGGGATGGAATCGTTTGAGGCTACTTGTCACCTAAGAAGTTTAAACGTATGTGTGCAGATGGCCCCGTCACCTCTGTCCACCCTCGGGGGATTGCGTCCAGGAAATAGGTGTAAATCAAGGGAGAGCCTTCTCAGACCGACAGCTAGACTAACCTAGATTCCTACAAAATGTCACAGATGGAAAGACAACGTTACTAGCCAACGGTCTCTCTGAAGAGCACATCTCAGTGCTTCTAATTACGTAGAGCCCTTACCTGAGCAGGGGGTGCTGTACTCTCTGAGGCTCCATGAATGGAGGGTCAGGCAGACATCATACTTAGCCCTGAGGAGATCTGAAGATGCCTTTTCCAGGAGAGGAAGCCATTTATTCTTTCTTCTCACAAGGCTGGCGTGCAGCCTAGTACACCCCACCCACTTTACCTCTCCTTGGGCCAAATGCCTTGGCTGCTGGTGTCTGCTGCCTCTATGGAAGCGATCAGGTCTGACTTGCTGTCTCTCCTACTTTTAG
Seq C2 exon
CTGTGTTTCCGATGACTCGGTAAAGCAATACTCATCCAGGGACCACCTAGCAAAGCACTTCCAAGTCCCCGTCTTCAAGTTTGTGGGCAAAGACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046365:ENSRNOT00000075682:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(10.0=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]