GgaINT0044692 @ galGal4
Intron Retention
Gene
ENSGALG00000008980 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr6:27270917-27271463:+
Coord C1 exon
chr6:27270917-27270975
Coord A exon
chr6:27270976-27271388
Coord C2 exon
chr6:27271389-27271463
Length
413 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
CGGTCTGATTTGTCCCACAGTTT
3' ss Score
8.65
Exon sequences
Seq C1 exon
ATTTGTCACCATGAACCTCTTGCCATTGGAGTCCCTTTGTGTTTTCCTGCTTCCTCAAG
Seq A exon
GTATTGAAAGCCATCTTTTTGCAGCAGGGGGTTCTGTGGCAGATGTTTCCCTATCTCCAGATGGAGTTCTTTGTGGGAGGGATGAGCTGAGCCAGTGCCTCCCCAGGAGTGTTTGGGTGAAGCCCTGAAGTGAGGGGAAAAAGCAATACCTGGGGAAATAGCTTTTCAGACGTGTGACAGATTGGTGTGTGAAGAGTCTATTCCAAATAAAATCGGATTATTTTGATACTCAAAGTTCATAGATGTCTCCATGTTCATAGATATCTCCGGTTGCAGCTGCTTGCTGTGTCTATGCCTCTGATTGTGATCTCCAGAGCCAAACCTCCCCCAGCTCTCATTTTTGCAGTTCCCTCATTAGTTTTTTTAAAGGCAGTTTCTAGCATTGGTGGGTGACGGTCTGATTTGTCCCACAG
Seq C2 exon
TTTGGTTGGCATTGGGCATGCAGGAAATCCTCGCTGACCAGGAGACGATTGGCAAGATCTCAGCTGCTGGCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980:ENSGALT00000014609:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]