RnoINT0164001 @ rn6
Intron Retention
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277696135-277700808:+
Coord C1 exon
chr1:277696135-277696196
Coord A exon
chr1:277696197-277700733
Coord C2 exon
chr1:277700734-277700808
Length
4537 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTGGTGTTTTCTCCTCCAGTTT
3' ss Score
9.87
Exon sequences
Seq C1 exon
GTCTAACAACATGCCTCCATATCTGTTTCTACCAGCCATCTACACTCTCCTGTTCTCCAGAG
Seq A exon
GTAAGGTGTCTTTCAGTGGGCTGTAAATTCTGAGGGCTTGGTTTGTTTCTAATCCCGCTCGCTGGCTTTTGCATGTGTGGAGAAGAGGAGGCATTTGCTCACCCGAAGCCAGAAGCTGATGTCAGATGTCTTCCTCCTCAGTCACTCTCCACTTCAGTGTTCGAGGCGAGACTTTTTTGCTGGACCCCTGACTCACTCTTTCTGCGAGGCAGGCTGGCAGTGAGGCCCTGGGCTTGTCCTGTCTCTACTACCAGTGCTGGGGTTGCAGATACACACCACTGCTCCCAGCTTTCATGTGCGTGCTGGGGATCCAAGCTCAGGCCTTCATGCTGGCATAGCATGCCTGGTGCCCACAGAGCCACCTCCCTAGCCCTGATTTTAAATGCGTAGTCTCTTGAATCTACATCTCCACTCCCGAGCAGCCTCCCTCCCCGAGGCCCCATTCTCTGCTTGCACTTCTCCAGTTCCTTGGGTCCTCTGGGCCCCTCCTTGCTGTTCTCCACATAGCAGCAGCCTTTTCCCTACAAATCCGATCAAGTCCAGCCACTGCTTTGCCCCTTCCTGAAGCTTCTAAGTGACCTTCTCTAAGAGGTCCCACCTCATCCTGTGAGTCCTCCGGCAAGTCTCCTCCTTCTGCACAGCACCCTTACTTTCTCCTCTTCCCAGAGGATCTGAATCCTGAGAGCCACTGTGCCAGATCACGTGACCCGCTCCCTCTCCTGCCACTGTCACCGAGTAAACTCCTCTCCATCCCTCAGTGCCCTCCACAGCTGCTCTGGGCTCCCAGATTTTCATTTCCCCATTCATCCCCCTAGAGACTGTGCCCTGTAGTACCTGGTGCAGCCTTGAGTTTTGGACAGTTGTTGGTTTCCCCTGGGAAGGACCCTGTAGATGATTACCCACTGCTGTTCCTTGAAGTGTTCCTCTTGCTTGGACATAGACTGAAACACAGAATTGCAGCTCCCTCCTGTTAACCTCCTGATTTGCCCCCAACCCCAACTTCTAACCTCTTTGAAGGATGAACAGAGGTGATGGAGGACCCAGTGTGCCTCCCACAGTCATCCCAGAAATAAGTACGCTGATGGTTAGTTGTGCAAGTCCAGCCTAGGGTGCACCTCTGCAAAACTGAGGTGTCAGACAGAAGCCTCTAGGAGTGTGATCTTCCCTAGGCTGTGTTTCAGAGAGCAGGTGTTTGCTGTCTGCTGAGTCAACTTTGGTCATCCCCCACCCCTTGTCCCCCCAAGAACAGGTGGCTGGAAGTAGAGGGCATTTTATCCCGTCTCCAAGCCTAGGAGAGGTATACGGTCTCACTTGCTATCTTCCTGGCTGAGGAGCTAGACCTCAACAGGTTTCTGATCGGCATCCGCATCCTGAGTTCTGCTCCGTCGTATGTCAGTGCTTCCCTTTTGTGGCCTTGTCCCACATGTTCTCACACTCGATCTATCCAACACTCTGTATGGATGAGGCCCTGGGATACAAAGAGGTTGTGTCGCTAACCCACGGTTAGTGGGACAGCCAGGCCTCCTGACTCCTGGTCTAACCTCATCATTGCGGGTCCTCTCGGGAGACAGGACTGCAGGAGCTCTCTGTGCAAGCCTGGACTCTCCTGTCCATAGGTGAGTGTTTGATTGCACCCCCAGTTTGCAGTATTGTCTGTATATAAGCATTGCCCACCCACCCACCAGGACCATGGAGTTCTGGAACCTTGGCTGGAGGTCTTTCAAAGAGGCACCTGTTGTGGTAAATATTAAAAATATCCACAGTCCCTCGCTAGCCGTCATCGTCCAACCACATGGCATTAGTGGGGTAAAGTCATCTCAGCCATGGCAGTTCCAGGGCACCACGCCACGCTACTTTTAGCTGTTCTCTGGTCCCAGCGGTGGCTGCCCTCTTTGCTCTCTGACGCCAAACTCTGCTCACATTCCCAGCAACCGGCTAAAATCAAGACTCTAGAGGTCCCAGTAGCTCCCTGTCTTGGACTCTGCTTATATTCCCTGCAACCACCCCCTGTGGTTATAGTCACAACTCCCAGTAACCTGTTAAAATCAAAACTCAATAAGCTTATAATGTATCAATCAGATTTATCTCAGTAATTTATCTCAGTAAATTTACACTCCACAAAACGTCCACACAATAAACTCACAGCCAATTGATAATGATAAAAACCGCCCACCTAGATAAGATAAATTGCCCTATAAAAATCCATCCCTTAAGAAATATTTGTAACAACCTGTGGCCGTTTAAGGCCACATGGATCTGGGTCGCCCTTCTCTGCCTCCATCTTGGATCTTCTCCCCTCCCCCTCCCCCCAACTTACAAAACCTTCGTTCACGACTTACTTTTTCACTACCCAATCACAGCCCTCGCCTGCATAAAGACATCGACCTACAGCAGCAGACCTTGATGAGAAGCAGCTAAAGCAGTCACTCTGTTCTATTCTGTTGCATTGTACAGTGGCTTGCAGAAAGCATTGAGGAGTCACCCAGACAAAAGACAGGCCTGCCCAAATCCTGGTACTCGCTGTAACCCTTTAGCACGGGATGCAGGGGGCAAAGTGACCCGAGGGTCCCCTGGTCCTGGATCTCCCCAGTGTTCCTGTCTCAGGGGGGAGGTAGGTTTGGGGTTCCTGAACAGTACTTTTAAGTTTTTCATGTAGTTGTGAAGAGTCTTTGGCTCCTGGGACCTTCGTCAACAACTCATAGACTTACTTCAGGAAACTTTAGTGCCTGCGGAATGCAAGTGGGGAGTGAAGGTCCGTGAACACAGAAGAAGGGCGTATTCCTATGCTCGGCGGTTTCTAGGGAGCTGAGGTCCCCATGGGATTATGGGATGAGCTGCAGCAGTCTCTGAGTTGACAGGCCTTGAGGGTCTCCGGTGCGGTGAAGCAGAGAGCCTGCCCCAGAACCGGTCCCCCATAATTGGGACTGTGGAGGTCAGTGCTGGGTCAGCACAGTGGTAGGAAGCAGGGACTGTCTGCTGACACCCGGAGGAAGGGAAACAGACCATGCCCAGCATGTCCTTTGAGTGTGTGTCTTATCAGTTTCCTGGGAGTTGAAAGCCCCATGAGATTCCTCTCCCCCAACCCTCATACCTGTTTACTCCCCACTCCTCATCCACCAACCAATCAGCTCCCCAGTTTGTCACATCTCAGAAGCTACTCACTGTCAGGATGCTTCATCTGCCCTCTGTGTCCACTCCCTGCGAGGCGAGGCTCTGCTTGCTTGCCTCCTCTGCCTGTGTCCCCACGGATTGTCTCACACTGGTCCAGCAGCAGCTCCATGTACACTCCCACTAGATCCCCACGCTTTGAAGTTGCAAAAAGGAGCTGGCTTTGCAAAATGGCTCCCTGGGTGTCCCCCCTCCCTATTTTCAGGCCATCACCTTCTAACAATCCTGAGGCCCCTTTGGTATGTTATCCCCACCTTCAAAGTTCGTTTCTAATTTTTTTTCAAATTTGGGGTGCCAGGAATTGACCTCGTGGCCTCGCGACTGGGCCCAGGCTTTCTGTCACTTCCCTCTACACTCAGTCCCAGAGTCTATAAATTATCCCTGACTGCTGATATACCATTATCAACTTATCAGTGAAGGCGCTACCCTCACACATTTTAGCTCTTGATCATATTAACCGTACCGGTAAATGTATCAACATTTTCTCCACATATTTTTGTGTGTCTGTTGTCTGCCTTTGTACTCCTCTACCACAGAGACTGTTGAAAGAGAGGGTCTTGACCTACATTTCCCTCCCATGACCTCTGTTCCATGACAGCTGTGTTTCCCTTTGATTTATTTTCAGTCATAAAACTACAGGACATTACCATCTTTATGATTCTTAACTCATGTGGCCAAACTGTTTTCTACAAACCTTTTGTCAATTGACAGAGTCGTCATTGTGGGAGAAGCCCCCCATTCAATCCTTTCTCAGTTCTATCTACATTTTAAATTTAGTCACGAAGTTCTTACATGTCAGCATGCTGGCACCCCCTTCGAACATGGGCCCAGATGCTTTTCTGCAGATTTGCCTCTTCGTGAGTTTTAAGTTTTATGACAGTGATGTTTGATCCTGCAGCAGATTAAGACCTTGCAAGAACATACCTGGACACACAGCTAAGGGCTGTCTCCAGAGGGGACATTGTTATGATCAAGGACAGAGCTCCTCAGGACCACAGTGTTTCCGTAGCCGTCTGGTGTTAATAAGTCAACAGTAACAATAGCAACAACAGCCCTTTCTGCCACAAGACGCTCAAATATAAATAACAAAGTTACTTCACAGAAGAGGAGAGATTGTCAAATGCTATCCATGGAATACTGGGGGCTAAGGGGTGGGAGCCGAGTGTTCACATGTGTTCTAGCATGAGGCACAGCCCAGCCTTACATGCTATAGCCAAGGCTCTCTGGTGGTTTTTGAGAGAAGAATATTAGACTTCTGTACGTTTCTACCTTCTGCTTTGTTTCCTGTTCACTTAGGACACATAGTGTTGAGGTAAAGATACCTCCCATCCTACCACGTCATGATTGCTTCTGGTGTTTTCTCCTCCAG
Seq C2 exon
TTTCCCTGTCCAGCTCTCTTCAGGAAGTGCATGTGAGCCGGGAGACCACGGGAAAGATCGCAGTGGCCAGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581:ENSRNOT00000051834:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]