GgaINT0045579 @ galGal3
Intron Retention
Gene
ENSGALG00000002509 | COL5A2
Description
NA
Coordinates
chr7:532770-533588:+
Coord C1 exon
chr7:532770-532877
Coord A exon
chr7:532878-533534
Coord C2 exon
chr7:533535-533588
Length
657 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GTGTCTGTGACTTTTTCCAGGGT
3' ss Score
8.94
Exon sequences
Seq C1 exon
GGCCCGCAAGGTCCCCAAGGTCCCATTGGCCCCATAGGTGAAGAAGGGAAAAGAGGCCCTCGAGGTGATCCAGGGTCAGTGGGTCCACCAGGTCCAGTTGGAGAGAGG
Seq A exon
GTAAGCAATCCAGAAGAATAATGTCTTGTGAGAGATGTACTGGCAAGTTGAAAACTTCCCATCGTGACCTAACCACGTATTTTTTTTTATGCTTTGATTGTGGGTACGATCAGACTTGATTTTCCTAACAGTATCAAATATTGGTGTACCACTTGATTCTGTACCACATTAGTTACTTCAGGGTGCTGTCTTCTGTGATAGACCATAATCCTTTAGAAAGTTGTACTCTAAAGCTCAAGATCTAAAAATATGGCATGATATTTTTTGAATTGATCTTCTGCTTATTATTTTATGGGGAAAGAAATCGGTGATACCATGCATTACTTTTGCAGTGGGTATTTTAATTCATGGATTCAGTGTACAGAATAACTTGGTAACAAATGCTGGAGATATGATGAGCCTAATCTGCAGATTCTGTACTTAAGCCCTGTATGGGTGGTTATCCTTTATTGAATCATGCTGTTCAGTATGCGTGAATAAAATACTGATATTTTCATGTCTCCCAGCGGACAAGAAAACCCCAAATTTATACTGTTGAAGAAAATTGCACGGAAATAAATTGAATCCCCAAACTAGAAGTCAAATACCTTATTTGCAGTAAGTTATGCTGAAAAAAATATATTAAGACAATGATCTCGTGTCTGTGACTTTTTCCAG
Seq C2 exon
GGTGCTCCTGGGAACCGTGGTTTTCCAGGTTCTGATGGCTTGCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002509:ENSGALT00000003954:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]