GgaINT0045683 @ galGal4
Intron Retention
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34838252-34841015:-
Coord C1 exon
chr7:34840864-34841015
Coord A exon
chr7:34838348-34840863
Coord C2 exon
chr7:34838252-34838347
Length
2516 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTCCTCTTTTCCTCTATCAGGTT
3' ss Score
11.14
Exon sequences
Seq C1 exon
CTGAAGTGCAGAGTGAGATTGAAAGAATCTTTGAGCTGGCCCGGTCCTTGCAGCTGGTTGTCCTGGATGCAGACACTATCAATCACCCCGCACAACTTATCAAGACATCTCTAGCACCAATTATTGTCCACGTTAAAGTGTCTTCTCCAAAG
Seq A exon
GTAATGTATCTCACCCTCAAATTATTTGCATTTGAGTTTTTAAACATCTGCATGGCGTTGGTGTAGGCAGGGTAGGATGTTTTACTCTTCCAACAATAACAGCAGTACAGAACGTGAGGCTGAAAGATCCTTCTGGAGCTCTGTCACCACCACTTTATGCAGTAGAAGTGTGTCAAAAGATGACTAATGTCTGTCATGTATTGTTCACTTCTTTCCTCCCATTCTCTCCCTGGAGAGGACAGAGTTGGTCACGTAGCTGTTTTTCTTTAAAGCTGCCATTTACGTTGTAGCTAATCCTGCATTTGGCATATTGTTCATGAAGATGCCAATCAGTATTTTACAGTCACCATTTTCCCCCGAAGCAGGTGTTGAATGTCCCCATTTTATCCTCTGGTGTGGGGAGGCCACTTAAAGAGAAGGATGGGTTCAGTCCCTGGCACCACGAGCTGCTGCCCACAGTGGTGAAAGCTTTCAGGATTTCTTAAGTTCTTTAGGGGAGAAAATAGAGTTATGTCACAGAACACATAGAAAATAATTAAATCATTTGCATTTCCTAAGACAGTTATCCTTGCTGCACAGGATAGGATTCAGCACAAACTGAATGCAGCCTAATTACATTAGCACAGCATTTCCCATGACCTGACTTACCCTTTTGAAGCAGAGCCTGCTAATGCAGCAGTGCTGCCCAGCTTGTTGGAGCTGGAGTGAGGACTGGGGGAGAGGATACCCTCCTGGTGGTGCTCTGGGTCACAGCACTGTTCCCTTCTGGCTTTGGCTTTTGCAGCTGTCAGCTGAGCTCACAGCTTCATTGCTCCCTGTAGCAGCAGTGTGACCCTGCTCGGCTCGCTGTCAGGGCAGCAGAAGCCAAAGAAGGCTTAAGATGCAAGGGAGTGGGAAAATGGCTGTTGTTTGGGCTTGGGTATATAGATAGGGTATCGCACTGTGATGAGTGGATATACCCTGCCCCTGCCTGTATGCCCATGTTGTAAGAGAAGATGCATTTTAAAGTGCTTTTAAAGCTTGGTTTGTATCGACTGAATTCAATTTGGGTACTATCCAAAGGAATTCCATTAGGGCTGAGAAGTTGCAGAGATGTCTGCCATGTGTAGTGAGTTCGATGGAACTCCTGCAGAGTTCATATTAGAAGACAACTTTGCTGGTGTAGAAAACCCTTTTTGAACTGTTCTCTCTGTACCCAGCCCTTGCTACTGGCTCTCTGCAGAGCTGCTCAGATCTCTACGTGGCTCTCCTGACAGCATCTTTCCCAGCCCATACTGAGCCTGGGTAACTGGAATCTGGTCATTCCCAGCTAGGCTTGTTGAGCTCAGTACAAATGAGTAGCACCACTGGCACATCTGGAGGAGGGTCACCTTCCACAGGGACTGACAGCTAAGGCTGGGGAAGGGAGGAAAGAAAACAAAGCTTCATGTAAGTGTAGGTGTATAGGGTGCAAAGTCTAACAGTTCCTGGTTGTCAGGGGTCAACTGGGGGTCTGTAGTGGGGCAGCACAGCTCAGTACCTTTGTTAACGACCTGGTTTATGAGTGCAGTGCACTTTGAGTACACATTTGTGGGAAATGCCAAAGTCTGGGGCAGGTTGATGTGCCAGAGGGGAGGGCTGACGTTTAGGTGGACCTTGGCAGGCTTTCACTGACGTCCTGAAGTTCTTCAGGGGGCACTGCCAAGTTCTGCCCCTGAGCTGATGTGAGCCCATGCCCAGCTGGGGCAGCTGGGCAGCCAGGGATGTGGGCTCCTGGGAGGCAGTGTGGGCACGAGGGAGCAGTGTGCTCATGCAGCAGAGACATGGCTGTGTGCTGGGCTGTGTGAGCACATGGTTGGTCCTGGCCCAGAGGGGTTACCCCAGAACTCATGTGGACAAGGAGCTGAGCGCTGTGATCCTGCTGGCCTTCCTCTGAGCGAGGGCTTGGCACAGAGACCTCTAGAGGTCCCTCCAACTTCAACAACACTGTGACTCTTTAATTTTCTTTGAGACTTTACAGGAAAATCCTTTAAATTCTCTAACTGCTCTGACCCTGAAATTCTAATAGTCGAAGAAACAGACAGAGGAATATATGAGCTGTGTGTGTAACATTCCTTCTGTACCCAGAACGTTCCTTGGAACAGATACAGTCACAGCATTATTGCTACAGAACACAACATCCTCCTGCTGCTGTGCTGCCGTCAGTCCTCTGTCATTCTCTGTGTGTGTATTTACATTTTGTGCTCTTCTAGAAGATGACATTGGTCATAAATAGCCTGTCACATAAAGTAAATAAAGCAAAATTGCCTTTTCCATTGCTATTGAAATATTTGCTGGGGATCTGATGTGATGCAGAGGGAAACGCCCAGCTCTCAGGGAGGCTCCCAGCCAGGTTTGTGCTTCTATTCAAGGGCAATATTTTGTTAAACATAATAGAGAGCTTCTGAAATTGGTAATCCTCCAGTGCAATGTCAGTCTCTGAGCTGTGTGGACGTAAGTGATTCTTAAACTCACCTTTTCCTCTTTTCCTCTATCAG
Seq C2 exon
GTTTTGCAGCGACTGATTAAATCTAGAGGAAAGTCACAAAGTAAACACTTGAATGTTCAGTTGGTGGCAGCTGATAAACTTGCACAATGCCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000020437:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]