GgaINT0045759 @ galGal4
Intron Retention
Gene
ENSGALG00000013235 | PDK1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:RefSeq peptide;Acc:NP_001026523]
Coordinates
chr7:17202331-17203148:-
Coord C1 exon
chr7:17203071-17203148
Coord A exon
chr7:17202408-17203070
Coord C2 exon
chr7:17202331-17202407
Length
663 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
TTAGACTTTCTTTTCTGCAGTTA
3' ss Score
7.05
Exon sequences
Seq C1 exon
ATGGTTATGAAAGTGCCAAGAGTCTTTGTGATTTGTATTATATGAGCTCTCCAGAACTTGTCCTAGAAGAGTTGAATA
Seq A exon
GTAAGTGAATGTGGGGTGAGGCACTTTCTTGAATGTAATGATAGCTTCTTCTGAAGTAGTTGGTAAAATGTTCTCTTTTCACTTTTTATATAGTTAACATATAGAGATCTAATATAGATTAGGATATTATATCCTCTACTGCATACATTTTTTTAAAAACCTGGCGGAAGGCTTCCCCTTTTCCTATCACACACTTGCACTTGCAGTCAGATACAACAGTCAAGTCACTTCAAAAAATTACTTGAACCCCTTGTCTGTGACTTGAAAAAATTTGTGACCGTATACCTGTGACCTCAGAGGTCAGCTACTGTTCCCATAGTCCTGCTGAATGCTAAAGAGCCTTTCTAACACTGTTTACTGGAGTGCTTCTCAGGTTAGTACAAGTTCAGACAGGCCTACAGAAAGAAACAATCTAAGTTGCTTCTAAAAGTAAATGAAAAAGCCAATGTACTCTGGGTAGCCAGATCTAGTGGAAGGTGTCCCTGCACATGGCAGTGGGGTTGGAACTAGACGGCCTTTAAGGTCCCTTCCAACCCAAGCCATTCTATTAAATTTTATTTTGCAAATTCTCTTAACAATACACGTATACGTACTGAATTACTACAGGAATGAATACAAGTTCCCTAGTTTGCCATTTAAATATTTAGACTTTCTTTTCTGCAG
Seq C2 exon
TTAAATCACCAGGACAGCCCATGCAAGTGGTGTATGTGCCGTCCCACCTCTATCACATGGTTTTCGAACTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013235:ENSGALT00000021613:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0251821=HATPase_c=PU(11.2=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]