BtaINT0109517 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016836 | PDK1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:HGNC Symbol;Acc:HGNC:8809]
Coordinates
chr2:24094062-24095939:-
Coord C1 exon
chr2:24095862-24095939
Coord A exon
chr2:24094139-24095861
Coord C2 exon
chr2:24094062-24094138
Length
1723 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TTTTCTCTTCTGCTCTGTAGCAA
3' ss Score
8
Exon sequences
Seq C1 exon
ATGGCTATGAAAATGCTAGGCGTCTGTGTGATTTGTATTATATTAACTCTCCCGAACTAGAACTTGAAGAACTAAATG
Seq A exon
GTAAGCCTGATGCCTTTTCCTAAATGATTAGTGTTATGATTACCTGAGAAGGAATGATAAGTTAGATGTGTTTTAATATAAAACAACTTGTTTATTGGATATGAAAGCTGAGGGAGAGAAATCATGTTAAAAATATTTGTATTTATGTGTTTGTACGTATATATGTATATTTTTTAATTTAGTTGGATTTTTTCTGAAAGACATTTTGCCTTTTTCTTTCCCATTTTCATTATTTTAATTGATAATATTGATTCTTTGCATATTTTTTATTTCCTGGTTAGTCACAGAAAAAAGTGATCCTCCTCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTTGATCCCTGGGTCGGGAAGACCCCTTGGAGAAGGGAATGGCTTACCCACTCCAGTAGTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGAGCCTGGTGGGCTACAGTCCATGGGGTCGCAAAGAGTCAGACACGACTGAGCGACTAATGCTTTCAAGAAAATTACATCTGACTTTTATATGTACTTCATGGGGTCGCGAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGAACTGAATGTAAGGTTTACCCTTTAAGATTTCTACTTCCTGAGTTTCAAACCAATTTTTTATTGTCGAGGAAGTAAAGACTGGAGATGTGAAAGAAGAAAGAAAGATGTCCATCTGTTGGAGACTCTGATTATTTCTGATGGTCTTCTTTTGGACACAAAAGGTTTAGATGCCTCGGAAGGAGATTGATGAGTCTCTCTCTGTCTTCCCTGGAGGTAGGGTAGTTTGACAGAGGGAGACATTACCTCAGTTAGAATGACTCTGTAAGAAGCATAAAATTAAATAGGCTTCTGCTGAGTTGTATTCTGGACCTTAGAGTGGGAGGGCAGTGGAAGAAGTTGCCCCATTGAAAATAGAGTTGCCTGGTTTTTCTAAAGCCATAATAGTACATTCAGTGAATAAGAACCACAAGGCACAAGTGACAGTTTGGGAACCTGAACTGCTGTGGGCAGTTTCCAGATGTACCATCTGTGTTTCCCAGAGCCAGTTTATTCATTGGAGAGTCTAGCTTATTGGCTGAATGAGAATTCTGAGGTATGGCGACTCTTACTCCTTTACTGAAAGTTCTGGTTTGCTTATTATCTGTTCTCTACCCCCAGCTAGGCTCCTCTTACATGTTTGAATGTAGAATTAGTGGCCCTTGATAAGTCAATGCTAGCTCAAAGTTTTTATTTGAATCTATATGCACAGAAATGCCCAAAATAAAACAAAGCATCCCACCTGGGTGAAACAATTAAAAAATGGCTTTTTAAAGAAAGAATGTATTTATGTGAGTTGGACCATGGAATTTAAAGACTTTAACACTTCTTTTTGGAAGGAAAAAATTCTGACCGTAAGACTGAGTGTCTTAAACAGACTCAACCATCATAGACAAGAATGGGAAGATGGGTTGGTAGATGGTTATGCAGGATTGCAAGAGTGACTGCAGGACTCATGTTGTCACAGGCAGGTATAAATTGTGTGAGCCTGGCATTCAAACACAGATACAGTAAAAAACTGGTGTAGCCCTTCTCCCCCCAGTAGTACTATCCTCCATAGTAAATGTTTTCTTTTCAGCACTACACAATATATTCTTTAAAATGCTTTAAGCACATCTCTCTGTACTTTCATATTTTTCTCTTCTGCTCTGTAG
Seq C2 exon
CAAAATCACCAGGACAGCCAATACAAGTGGTTTATGTACCATCCCACCTCTATCACATGGTGTTTGAACTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016836:ENSBTAT00000038518:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0251821=HATPase_c=PU(11.2=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]