BtaEX0026435 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016836 | PDK1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:HGNC Symbol;Acc:HGNC:8809]
Coordinates
chr2:24092147-24097023:-
Coord C1 exon
chr2:24096928-24097023
Coord A exon
chr2:24095862-24095939
Coord C2 exon
chr2:24092147-24092245
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGATTCACACTAGATG
3' ss Score
7.36
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CTTTATTATTTGGTGGAAAAGGCAAAGGAAGCCTATCTCATCGGAAACACGTCGGAAGTATAAATCCCAACTGCAGTGTGGTTGAAGTTATTAAAG
Seq A exon
ATGGCTATGAAAATGCTAGGCGTCTGTGTGATTTGTATTATATTAACTCTCCCGAACTAGAACTTGAAGAACTAAATG
Seq C2 exon
AATGCAATGAGAGCAACGATGGAGCATCATGCTGACAAAGGTGTTTATCCGCCTATTCAGGTCCATGTCACACTGGGTAAAGAGGATTTGACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016836_MULTIEX3-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=PD(13.2=66.7)
A:
NO
C2:
PF0251821=HATPase_c=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAAAGGCAAAGGAAGC
R:
CTTTACCCAGTGTGACATGGACC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development