GgaEX1042832 @ galGal3
Exon Skipping
Gene
ENSGALG00000013235 | PDK1
Description
NA
Coordinates
chr7:19078959-19080136:-
Coord C1 exon
chr7:19080047-19080136
Coord A exon
chr7:19079699-19079776
Coord C2 exon
chr7:19078959-19079035
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTATTTCTTACAGATG
3' ss Score
10.99
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
CTTTACTGTTTGGTGGGAAAATTAATCCAGCTCATCCTAAACACATTGGAAGCATTGATCCTAGCTGCAATGTTGTTGGAGTTATTAGAG
Seq A exon
ATGGTTATGAAAGTGCCAAGAGTCTTTGTGATTTGTATTATATGAGCTCTCCAGAACTTGTCCTAGAAGAGTTGAATA
Seq C2 exon
TTAAATCACCAGGACAGCCCATGCAAGTGGTGTATGTGCCGTCCCACCTCTATCACATGGTTTTCGAACTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013235-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
A:
NO
C2:
PF0251821=HATPase_c=PU(11.2=53.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGGTGGGAAAATTAATCCAGC
R:
TGAAAAGTTCGAAAACCATGTGA
Band lengths:
159-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]