DreEX0054431 @ danRer10
Exon Skipping
Gene
ENSDARG00000013128 | pdk1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:ZFIN;Acc:ZDB-GENE-091204-402]
Coordinates
chr9:3133240-3134530:-
Coord C1 exon
chr9:3134435-3134530
Coord A exon
chr9:3133486-3133563
Coord C2 exon
chr9:3133240-3133316
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCTGTTATTTTTTCTTCCAGATG
3' ss Score
11.76
5' ss Seq
ATGGTAACT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CTCTTCTGTTCGGAGGAAAGGTGAGGGACAATCCTGCTCATCCCAAACAGATCGGCAGCATTGACCCCAGCTGTCGGGTCACGGATGTGGTAAAAG
Seq A exon
ATGCTTATGAAAATGCCCGAAACCTGTGTGACCGGTATTATATGAACTCGCCCGAGCTAGTGTTGGAGGAATTTAATG
Seq C2 exon
TTAAAGGACCAGATAAACCCGTTACTGTGGTTTATGTACCATCTCATCTCTACCACATGGTGTTTGAGCTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013128-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=PD(13.2=66.7)
A:
NO
C2:
PF0251821=HATPase_c=PU(11.2=53.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGTTCGGAGGAAAGGTGA
R:
AAGAGCTCAAACACCATGTGG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]