MmuEX0034265 @ mm10
Exon Skipping
Gene
ENSMUSG00000006494 | Pdk1
Description
pyruvate dehydrogenase kinase, isoenzyme 1 [Source:MGI Symbol;Acc:MGI:1926119]
Coordinates
chr2:71883843-71887458:+
Coord C1 exon
chr2:71883843-71883932
Coord A exon
chr2:71885982-71886059
Coord C2 exon
chr2:71887382-71887458
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGCTTCACACTAGATG
3' ss Score
7.86
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCTTATTGTTCGGTGGAAAAGGAAGTCCATCTCATCGAAAGCACATTGGAAGCATAAATCCAAACTGCGACGTGGTGGAGGTCATTAAAG
Seq A exon
ATGGCTATGAGAACGCTAGGCGGCTTTGTGATTTGTATTATGTTAACTCTCCTGAACTTGAACTTGAAGAACTAAATG
Seq C2 exon
CGAAATCACCAGGACAGACAATACAAGTGGTTTATGTACCATCCCATCTCTATCACATGGTGTTTGAACTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006494_MULTIEX3-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
A:
NO
C2:
PF0251821=HATPase_c=PU(11.2=53.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGGTGGAAAAGGAAGTCC
R:
TGAACAGTTCAAACACCATGTGA
Band lengths:
159-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types