GgaINT0045905 @ galGal3
Intron Retention
Gene
ENSGALG00000007511 | F1NM67_CHICK
Description
NA
Coordinates
chr7:7148261-7148906:-
Coord C1 exon
chr7:7148736-7148906
Coord A exon
chr7:7148503-7148735
Coord C2 exon
chr7:7148261-7148502
Length
233 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
CATGGTCCTGGGCATCCTAGGTT
3' ss Score
5.2
Exon sequences
Seq C1 exon
GGGAGCCTGCTGAATTTGATGTGAAGTTTCGTCGTGCTACGGGGTACCCAATTGATATCTACTACCTCATGGACCTCTCCTATTCCATGCTGGATGACCTAGAGAACGTGAAGAAGCTGGGAGGACAACTGCTTAGAGCCCTGGAGAGCACCACACCCTCTCGCCGCATAG
Seq A exon
GTGAGCCTGTCTCCAGCAGAGGGCCAGCTGTTCGCTGGGAAGAGCAGTGAGGCCAGTGGACAAAACAAGATGCAGGATGCAGGCAGTGTAAGGCAGTGTGCTGGAGCAAGGGATGTGGACAGGTACTTGGTTCCCCATGCAGGAGCCAGGAGGCTGTTCATGCCTGGTGCCTTCAGGACACCTGCCAACCTCTGCCTCTTCCATCCCTAACACCATGGTCCTGGGCATCCTAG
Seq C2 exon
GTTTTGGTTCCTTTGTGGACAAGACTGTACTGCCTTTTGTCAACACACATCCTGAGAAGCTGAAGAACCCTTGCCCCAACAAGGACAGTAATTGCCAGCCTCCCTTCGCCTTCAAGCACATCCTCTCACTGACTGACAATGCCGAGAAGTTTGAGAGTGAAGTGGGGAAGCAGTTCATCTCAGGGAACCTGGATGCCCCAGAAGGGGGGCTGGATGCCATGATGCAGGCGGCAGTGTGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511:ENSGALT00000012144:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(13.7=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTTCGTCGTGCTACGG
R:
CGGCATTGTCAGTCAGTGAGA
Band lengths:
294-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]