GgaINT0046081 @ galGal3
Intron Retention
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19465920-19469506:-
Coord C1 exon
chr7:19469419-19469506
Coord A exon
chr7:19466004-19469418
Coord C2 exon
chr7:19465920-19466003
Length
3415 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
GCCATTCTTTATCTTCAAAGGTG
3' ss Score
7.87
Exon sequences
Seq C1 exon
AGTCTTGAAACTTAAAGAAGTTGAAAATAATACAGACCAAATAGAAATTGCAGAAGACTTTATAATCACGGCTAACAGAGAAAACTGT
Seq A exon
GTGAGTTTTCACAGGAATTTCTAATATTTGAGATGACAGTGCATAATTTTGAGCAATTAGGAGGTGTTCTGAGAATGTATATGAGCAATCACTGTATTTAATGGGTATAACTCAAAGTTCTTTGACACTCCTTGTTTTCATTGGTTTTTTAAAACTATATGAAAGAAATTTTGAAAACAAATTACATTTTCAGGATAGTTTTCTGAATCCTCAAGCTGTTTCTAAAGTTCACTGCAGTCTTTAAGGTGTGCAATATAACTGTATCAATGATGTAAAACATATTTACAAGATGGTGGCAGATATCCTTGGAATGAAGGTGTCAGCAAGGATAATTTTGTTTATGCTCTGCTAAACTGATTATACAAATGCTAGAAATGTTTCAAGTCTCATAGCTTATGGGTAAGTCTTTTTAAGACAACAGAGACAGTACATTCCTTCAAAAAATTTGACTCTTCCGTGCTGCGTATACCTGCACAAGGTATTCATGTACCCCTTGGTGAGCCAATTCAGTGCAATAACATAGCAGATAACAGCTCCGAGGGAGACAAAAAAAAAAAAAAAAAAAAGAGATAAGTACTCATTTTGCTTACATGGTGAGTTGAACTGGAGCTGAAACAGAGGGCCAGAAGAACAGAGAAAAGTAGAACCAAGCGGCTGGGGAATTATATGAACCTCTGGCAGAAATGAGCTGTTAAATCACCTCCATTGTTTCATGAAATCTTTTAGAGTGCTTTTGTGGTTTTTCTATCACAAATTAAAAGAAAAATCAAAGAACAGAATTCCACCACAGGGCNNNNNNNNNNCTTCTATATTTGTTCTCTGAAAGACAATGCTTTGGTAATATATTCATATAGTAGCTTCTCTGAAATAAATGTGTATCACGTTTGTCCTCATCTCTCCTTCTGAGCATTGCTGGAGGTAACAAAGTATTCATTTTCCAGTGTGGTGCTTTCACAGGGATTGACCTACAGCATTCTATTTGCCATCCAGTGAAGTCATATTTTCTTCTGAATTACTATTGCTTCTGATATTTCCTTCATTGCACTGCCAATGCTACATAGCATTGCATTCACAACTTAATAAGTGAAGAGTCAAGCAGAATCTCATACCTAATTCCTTGTGTGGTAACATCTTAATGCACTTCCTGGTCAGCCTACCAGTTGGCATTTTAAGAATAAATTTCCTTAATATCTGTGGTTTATCCTTGATTTGTACATTTTCTCTCTCTAGAAAGATTTTATTACTCAGCTTAATCCAGCATCCCCTTTTTTTTTTTCTTTTATGTACTATTCATCATATATTCTTTTATGTGAGATGACTGTCTCAATTTTTTTTTTTGATCTACATGTGACTTGAAGATATTTATATAAACAGTTTCTGGCCTCTTACTTGAGGATTCTTTACTAAAAAACTTCTCATATATGTTCTTATCTCTTTTATTAGCCTGATCAAATCAGTGATCCTCCTCCTGTCTCTTCTAGCTTCAGAACATCTTTCACAGCAATAGTTGAAGATCAATTTAGATGCAAAAGGACTTGTGCAAACCTTTCCCATCTAGTTTTTTTCTATGCGGGTTCATGCATTTTAACATTTGAATGATTAGTCAGCTAAATTTAACAACAGAAAGCATCTGCCAAAACTTCAAGATTTTGATCAATTTGTGTCATTTGCATCTGAAATCACAAGTCACTGTAGGCTTACACACTCCACTAATATTTGTGCACAAGAAAGGCTGAGCCTGAGGCTTGAAGCACAAGTTGAAGTTTGTGCTACTATGTTACTTATGTCTTCTCAGATTACTAGAATTGTTCAAGGGTTTGCAGAATGTAGGTTAAACCTTCATTTTGTATAGTTTTAGGAGTGGCTGCACATACAGTCATGGTACAAAGTCAGTGCTTATTGCAAATTAAAAGAAAAGGTGAAACAGTTCAATGGAGTATCCTTCAGAATTAGAACTGTTGGAGTCTTTATTCATTTATTTATTTGTTACTTTGTTTCTCTGCCATCTTTTCTGGTCATGTTTATCAGAGTAATATTTATAAACCTTCAGAGGTATGTGGAGAAGAGCTGTGTATTTCCTCTCTACTTAGATCTGGGAGGTTTTAAGTATAGTAATGTTCTAAGCTTTCCCTTTCTGTTTCAGGCAAAAAATGGCATACAAGATATGAAATGCTGTTCGCTGGAACCTGATTGGATATATTTCCATCCAGATATGTCGGGCAGAATAATCCACGTGGGACCAAATTTGATAAAGTATGACTCTTTTTTTTTTTTTTTTTCCCTCAAGTCTTGTTTTTATTAGGCAGATAGTTGCATAACTGCATAAATTCAGTAGTTTGATATCTGTGGGCCAAAACACTGTCATCAGTTCCTAGAAACTAGAAAAATAATGAATTTGTCAGAATCAGGAGCCCTGGTAGAAACGTTTGCAGATTTTTAGATGGTGAGTGTGTGCATTCACCGGCAATAGTAGAATCTGATATTAAAAAAAATTCAGGACAACAGTGTTAAAATTTCAGTAATACACATAAATGANNNNNNNNNNTTTCTATCACAAATGTAAAAGAAAAATCAAAGAACACAATTAGGAAGAACAGTTTTTGGTAAGGCCGTGTCATTTTCCCTCAGCATATATAGTTTATAAAAAAGCAAAAGCTTTTTTTATCATTTATGAGTACTGTAAAGTCCCCAGTAGTCAGTGATACTAATTTTGAACCTTTCTTAGGAGAAACGTTTGTATATTATAAATCTATACTCTGGAATAAAATTTCTATTAAATTCAGAAAGGATAAGCTTTGTCACCTAATGGATTGCCTTTGATTATTTAGGAGTTGAGTAGACAACTTTCTGTTGGAATAAAAGTTAAGAAATTAGAGTTGTTGAATCCTGTCTGTAATCTGCTTTTTACTTTTGACCTCCATTAAGGTATCGATAATGCCAATTTTGAATGTTTTTGGCATTAATGATACCCAATGAAAGCAGCTGTGGTGGTTTAAGATGCTACTTTGTCTGTCTCCTGGAATTAAGATTAAGAAGCAAATTGGTGGTGACTTAGCCATCGTCATTCTCATTCCAACATCTTGGCTCCAGTAACCTCTGTTCTAAAAGAAATGGTAGTGGAGAAACTTTGCCATCTCCATAGTAATGAGAACCTGTAAATGACTAACATCAGTTGTACCTCACTGAAAGCCACTAAATTCATAAGCCCTCATAAAGAACAGATGGCAGCAATAAGGCTATGTATTGCTAATAAAACAAGATTCCAGAGATTAAAGCAAGGTCAGAAAGGAGGCATGACAAAATTCCAGAGATTAAAGCAAGGTTAGAAAGCAGAAGACATGAATTAGATATGTTGTCAAGTAGATATGATGAAAGTATAACGCTCTAAGTCCAGGGCCATTCTTTATCTTCAAAG
Seq C2 exon
GTGAACAACTCTGTTACTGTAACATCTTCTGGTCGAGTGGTGAAAAAGCGTATTAACTTGCTGGATGATGATCCAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558:ENSGALT00000015562:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]