HsaINT0045229 @ hg19
Intron Retention
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172333370-172334580:+
Coord C1 exon
chr2:172333370-172333460
Coord A exon
chr2:172333461-172334496
Coord C2 exon
chr2:172334497-172334580
Length
1036 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TATTTCTTTCCATATGATAGAAT
3' ss Score
4.23
Exon sequences
Seq C1 exon
AGTTTTGAAGCTAACTGAAATAGAAAATAATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTTGGCCAACAGGGAGAACCATAAA
Seq A exon
GTAAGTCAAGAGTACTTTAAAATCCTTTATATATCATTGTCTTTCTATATAAGACTATAATATGCTAATATATTTGCCTTTGAGTGTAGCAGAAAACAACAGCACAGCCCTATAAAAGTCTGTACATTTTGTCTACATGGGTAGCCAGTTTTAGCCCCATGTACATTTCAGATTTAAAGAAAGTTGACTATCTTGAGTTTGTCTTTTGCTGATTTCCGCTTCTTTTCTGAGTTTCCTTTTAAGTTTTTATTGATGAATTATCAACCTTTGGGTCTAATTAATTGTGCAAACTTAAATTTAATTGGGGTAATATATAAGTCTTTAAAAATCACATACCATACTTTAACTCCAGATGGTACTTTTCTTTTAGTGTATAAATTAAGACCACAAAGAAAATTATGGGGAGAACAATTTCAAAAACAGATCCACTTTTTATTTGCTGTGCTATATACTAAGGCAAAAGTCAGGTGAATGAGGCAGCTAATCTATAATCTTTTAAATAATTTTTTTTTTGCCCATTCTGGCATTTTAGCCATTAAAAACTTTAATAAAGTATTTTTGAGCCGGGCATGGTGGCTCACACCTGTAATCTCAGCACTTTGGAAGGCCAAGGCAGACAGATTGCTTGAGTTCAGGAGTTCGAGATCACCCTGGGTGACATGGTAAACCCTGTCTCTACAAAAAGTAGAAAATTAGCCAGGCATGGTGGTGTATGCCTGTAGCCCCAGCTACTGGGGAGGCTGAGCTGGGAGGATCACTTGAGCCTGGGAGGCAGAGGATGCAGTGAGCCAAGATTGTGCCACTACAGTGAGGCAAGATCGCACCACGGCACTCCAGCCTAGGCGACAGAATGAGACCCTGTCTCAAAATATGAAACGGAGGATCAGAAATCTGATTCAGAATTTTCTCAGTTGAGGAAAGAATTGTGGATGTGGGAGAAGGGTTGGTAAGTTTTACCAAATTTGTTAATACAGTTTTACCTTTGACTGCATGTAATAGAACTTGTCATATCTTTTTATTTCTTTCCATATGATAG
Seq C2 exon
AATGAAAATGTACTCACTGTTACAGCTTCTGGACGGGTGGTAAAAAAAAGTTTTAACCTTCTGGATGATGACCCAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-DCAF17:NR_028482:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)