HsaEX0018621 @ hg19
Exon Skipping
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172330376-172334580:+
Coord C1 exon
chr2:172330376-172330485
Coord A exon
chr2:172333370-172333460
Coord C2 exon
chr2:172334497-172334580
Length
91 bp
Sequences
Splice sites
3' ss Seq
AATCCTTTTTCCCTTCTCAGAGT
3' ss Score
10.3
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCAAAAAATGGGATCCAAGAAATGGATTGTTGTTCTCTAGAATCTGACTGGATCTATTTCCATCCTGATGCTTCTGGTAGAATAATACATGTTGGTCCAAATCAAGTCAA
Seq A exon
AGTTTTGAAGCTAACTGAAATAGAAAATAATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTTGGCCAACAGGGAGAACCATAAA
Seq C2 exon
AATGAAAATGTACTCACTGTTACAGCTTCTGGACGGGTGGTAAAAAAAAGTTTTAACCTTCTGGATGATGACCCAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827_MULTIEX1-5/7=4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTTCTCTAGAATCTGACTGGA
R:
CTCTTGTTCTGGGTCATCATCCA
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)