MmuEX6102073 @ mm10
Exon Skipping
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71084425-71087398:+
Coord C1 exon
chr2:71084425-71084534
Coord A exon
chr2:71086539-71086626
Coord C2 exon
chr2:71087315-71087398
Length
88 bp
Sequences
Splice sites
3' ss Seq
GAATTCTTTTTCCTTTCCAGAGT
3' ss Score
9.55
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAAAAAATGGAATCCAAGAAATGGAGTGCTGTTCATTAGAATCTGACTGGATCTATTTCCACCCTGATGCTTCTGGAAGAATAATACATGTTGGCCCAAACCAAGTCAA
Seq A exon
AGTCTTGAAGCTAAGTGAGGTAGAAAATGATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTGGGCTAAAAGAGAAGACAGA
Seq C2 exon
AAGGAAAATTTAATCACCGTTACAGCTTCTGGACGTGTGGTGAAAAGAAATGTCAGCCTTCTGGATGATGACCCAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966-'30-37,'30-36,33-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAATGGAGTGCTGTTCAT
R:
TGGGTCATCATCCAGAAGGCT
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types