GgaEX1018814 @ galGal4
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17522507-17524807:-
Coord C1 exon
chr7:17524698-17524807
Coord A exon
chr7:17524197-17524284
Coord C2 exon
chr7:17522507-17522590
Length
88 bp
Sequences
Splice sites
3' ss Seq
GATTTTTGTCTCTTCGGTAGAGT
3' ss Score
5.62
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCAAAAAATGGCATACAAGATATGAAATGCTGTTCGCTGGAACCTGATTGGATATATTTCCATCCAGATATGTCGGGCAGAATAATCCACGTGGGACCAAATTTGATAAA
Seq A exon
AGTCTTGAAACTTAAAGAAGTTGAAAATAATACAGACCAAATAGAAATTGCAGAAGACTTTATAATCACGGCTAACAGAGAAAACTGT
Seq C2 exon
GTGAACAACTCTGTTACTGTAACATCTTCTGGTCGAGTGGTGAAAAAGCGTATTAACTTGCTGGATGATGATCCAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGATATGAAATGCTGTTCGCTG
R:
TCATCATCCAGCAAGTTAATACGCT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]