GgaINT0046080 @ galGal4
Intron Retention
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17524197-17524807:-
Coord C1 exon
chr7:17524698-17524807
Coord A exon
chr7:17524285-17524697
Coord C2 exon
chr7:17524197-17524284
Length
413 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGA
5' ss Score
3.87
3' ss Seq
GATTTTTGTCTCTTCGGTAGAGT
3' ss Score
5.62
Exon sequences
Seq C1 exon
GCAAAAAATGGCATACAAGATATGAAATGCTGTTCGCTGGAACCTGATTGGATATATTTCCATCCAGATATGTCGGGCAGAATAATCCACGTGGGACCAAATTTGATAAA
Seq A exon
GTATGACTCTTTTTTTTTTTTTCCCTCAAGTCTTGTTTTCATTAGGCAGATAGTTGCATAACTGCATAAATTCAGTAGTTTGATATCTGTGGGCCAAAACACTGTCATCAGTTCCTAAAAACTAGAAAAATAATGAATTTGTCAAAATCAGGAGCCCTGGTAGAAACATTTGCAGATTTCTAGATGGTGAGTGTGTGCATTCACAGGCAATAGTAGAATCTGATATTAAAAAAAATTCAGGACAACAGTGTTAAAATTTCAGTAATACACATAAATGACAAATATAATTTATTTCAATTTCAGTTATTTCCGATGGTTTTAATATAGCTGATCTTTCAAATTAAAAATATAGAAGTATTGCAGTAAATGTATATGAATGTATACTCATTTTGTGATTTTTGTCTCTTCGGTAG
Seq C2 exon
AGTCTTGAAACTTAAAGAAGTTGAAAATAATACAGACCAAATAGAAATTGCAGAAGACTTTATAATCACGGCTAACAGAGAAAACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558:ENSGALT00000015562:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATACAAGATATGAAATGCTGT
R:
ACAGTTTTCTCTGTTAGCCGTGA
Band lengths:
190-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]