DreINT0055021 @ danRer10
Intron Retention
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3532793-3534460:-
Coord C1 exon
chr9:3534351-3534460
Coord A exon
chr9:3532881-3534350
Coord C2 exon
chr9:3532793-3532880
Length
1470 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
3' ss Seq
TTTAATTTCCTCTTTTACAGCAT
3' ss Score
10.05
Exon sequences
Seq C1 exon
GCAAAGAACGGCGTCCAGGACATGAAATGTGACTCTCTAGAAGTGGACTGGATCTTTTTTCACCCAGATGACTCCGGTCGAATCATTCATGCCGGGCCCAGCACAATAAA
Seq A exon
GTGAGCATAAATGTTAATGTTTTATTAGAGACATGTCACTGGACAAGGATAAACAAGTAAATGAGGAGACCTTACACTGTAGTCTGTGCAAAGGTGTAGAGTAGTCGGAGCAAAGTACTAGTGAAGTCTGTTGAGTTCTCTGAGCAAAGTTCCAGAGAAGCCTGTCAAGTAGTCTGAGCAGAGTCCTAGAGAAGCCTGTCAAGTAGTCTGAGCAGAGTGCTAGAGTTGTCTGAGCAAAATTCTAAAGAAGCCTGTGAAGTAGTCTAATCGACGTTCAAGAGTAGTCAGAGCGAAGTCCTAGAGTAGTCTGAGTGAAGTCCTAGGGTTGTTTGAGCTAAGTCCTAGAGAAGTCTGAGCAAAGTTCTTGTGAAGTCTGTCAAGTAGTCTGAGGGACTTTCCAGAGAAATCTGTCAAGTAGTCTGAGCAAAGTTCTAGACAAGTCTGTTGAGTAGTTTGAGCAGAGTTTTAAAGAAGCCTGTAAAGTAGTCTAAGCGAAGATTAAGAGTAGTCAGAGCAAAGTTCTAGATAAGTCTGTTGAGTAGTCTGAGCGAAGTTTAAAAGTAGTCTGAGCGAAGTCCTAGAGTAGTCTGTCGAGTAGTCTGAGCGAAGTCCTAGAGTAGTCTGTCGAGTAGTCTGAGGGAAGTCCTAGAGTAGTCTGTTGAGTAGTCTGAGGGAAGTCCTAGAGTAGTCTGTTGAGTAGTCTGAGCGAAGTCCTAGAGTAGTCTGTTGAGTAGTCTGAGCGAAGTCCTAGAGTAGTCTGTTGAGTAGTCTGAGGGAAGTCCTAGAGTAGTCTGTTGAGTAGTCTGAGGGAAGTCCTAGAGTAGTCTGTTGAGTAGTCTGAGGGAAGTCCTAGAGTAGTCTGTTGAGTAGTCTGAGCGAAGTCCTAGAGTAGTCAGAGAGAAGTTTTAAAGAAGTCTGTAGAGAAGTCAGAGCAAAGTTATAGAGAATACATTCAAAATGTTAAACACGTCAGCACCAATAGCCTTGTGGTTATTGCGTCGACACATGGCACTGAGGTGTTTACGGCGACCTGAGTTCGATTCCCGGCTCGAGGTCCTTTGCCAACTATTCCCTTATCTCTGCTCCCCATACTTTCCTGTCTCTACATCTCCACTGTCCTATTACAATAAAGGTGAAAACCCCTAAAAAATAGATATAAAGAAAAGTTAAAGACAATGTATATAATCTTTTCAGTTATAAACTTACATTGCAACCTACAATTTATGCATTTGTAATTCCACGCTGCCTTACATTTTTTACTTTTCTAGTCATCTTAACAGCGTAGAACTTCAAAAAATGTAGTTAAAGTCAGATTTTATGAAGTAAAATAAAAAATGTCACAACTTTTTGTCATTGTTTTTTTTTGTTTTTTTTTACAGTGTAACAATGATAGTTTTCTTTTGGGTTAAACTATTTGGTTTTTTTCCCCTGGAGTTGATTTTTTTTTTCTTTTAATTTCCTCTTTTACAG
Seq C2 exon
CATTCTCAAGATCATGGCGGAAACAGGATGTGACTGGAAGTATGAGATCATCACAGATTTCTCCATCACCGCTGCTCGTGACAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909:ENSDART00000145043:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAACGGCGTCCAGG
R:
ATTACTGTCACGAGCAGCGGT
Band lengths:
198-1668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]