MmuINT0046875 @ mm9
Intron Retention
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:70922482-70924683:+
Coord C1 exon
chr2:70922482-70922591
Coord A exon
chr2:70922592-70924595
Coord C2 exon
chr2:70924596-70924683
Length
2004 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
GAATTCTTTTTCCTTTCCAGAGT
3' ss Score
9.55
Exon sequences
Seq C1 exon
GCAAAAAATGGAATCCAAGAAATGGAGTGCTGTTCATTAGAATCTGACTGGATCTATTTCCACCCTGATGCTTCTGGAAGAATAATACATGTTGGCCCAAACCAAGTCAA
Seq A exon
GTGAGAGATTTTTTTTTTTTAGCAGTTTAAAATTAAAAGCAATTTTTGTAATGTTTATTGACATTGTTGTTTTCAATTGAAACCATTGTAATTCTGTGAAATATTCGCTTGGGTGGAGAATTTCCTGAGAGACTATCATCTACAAAATCTGGTTTTATTCTTTAGCTTTGCCATTGCTGTTTGTAAGTTTCTCACATAAGTTCCTTGACAGATGATCCGTGAATGAATGAAAGGGAATTATTGATTACTCTTTCCTCGTTGAGTTTTATTTGTTTGTTTTGTTTTGTTCTTAGGAATTTGCTGTGTAGTTCATACTGGCAGCTAGTTTTGTGTAGCCCAGGCTGGCCTTGAGCTGCCTTCTGCTTCTGTGCCCTGACCACTGGGGATGCAAGACTGTGCCATACTGGGTCTGAGTTTTCTTAGGATTGATGAGAAAGAAGATAGCTGAGCCAGGTGGCACAGGCCTGAAATCTCAGCTGTGCAAAAGGCCAAGGCAGGAAAATTCTAATTTCAAGGCCAGCCTAGGCAACTTTGTGAGACCTCTTACTAAATAAAATAAAAAGAGCTGGAAATGTAGTTCAGAAGAACAGTACTTGCCTAGAGTGTGTGAGGTCCCAGGTTCAGTCTCCGGGCCCTCCAGGCAGGATGATGATCTGTGTTTGTTCTGACTGATGGGCTAGCGTTTGTTTGCTGTTGGCTGTTGACCTTCTGCTTAAAATGCTCTTCATTTGGCTTGAAATAGTCTTGATGTCAAAATAGTCTCAAATTTTTATCTTTTACCCATACTTCCTCTAACTGCAGCTTATCCTCAGTATTTAGGTCTTTTCTTCTCACACAGTTTTCTGTCTGTTTGATTCTAGTTACCATGATTCAAAACTGGAAATATTCTACCGTTCTCACCCCCAGCTTGTATACTAGCCCAGTCAAGACCAAGACCTCTCCTGCCAGAAATCTGAAATCTTTTTTTTCTTCCTTCCTCTTCTTCTTCCTCATCCTCTTCTTTCCTTTCCTTTCCCTTCCCCTTCCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTATTTTTTTCTAGTCAGGATCTCTATGTGGTCCTAGCTGTCCTAGAATTTGCTTTGTAGACCAGGATGGTCTCAGATTCACAGAGATCTACGTGTCTCTGCCTCCCAAGTGCTGGGATAAAAGGCATGTGCCATCAAGCTGGCTTTTTCCTAGGTTTTAAAAGATAAGCACCTATTTATATTGTCACTAATTGAGATAACTCATCTCTGGGTTTAAAGCATTATCTGATTATCATTGGCAACTATGAAGTACCCAGTTGTCCCTGCCACAGTGGCTTCTTGCTGTTCTCTTTGCCTATGGGACTTGGATCTTTGAGAACATTGTACTTTTGAAGTATTTTAATGATGTGAACAGATTTCTGTGGGTGGAAAGCAAATTATTTTACTTTGTCTTGATTAATAAGCTTGACACATGAGATCATTTATAATCTGCAAATCCGAATCTTAAAATATAATCCTTAAAAAAAATGGAATTGTTGGTGGCAGATTTTGCTCTCTTGTGAAAGTCTAGCATTCCAATTAATTGCTGCCCTGTCTCTCTCATTGTTAACTCTAAGTACTATGCTTAGCTGTGTGTTCTACAGACACAACAGTGCAACTCTGATATGAGGGATGAGACACTCAAGTCCTGCTGCACAGAGGGAGAGATGAGCTTTGCACTGTAGTGTCATTCACAGGCTGAGCCAGCTGCTGCTTTACCTGTGTAAGCACCTCGACTCATAGCTGCACTTTCCTGGTTCACAAAGATGAGTGTGAAGAAGGTTATGGATTTTAATGATGAGGTTAATGTTACAGACAAGTCAGTGGAGGAGACGTGAGTTGCCACAGATCGATTCCCTTTGTTGAGCTTCGTCTGAGGTTAGCTTTGGCAGATTGGTGGTGTTTTGCAATCTTGAGTTTTTGGAATTCTTTTTCCTTTCCAG
Seq C2 exon
AGTCTTGAAGCTAAGTGAGGTAGAAAATGATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTGGGCTAAAAGAGAAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966-Dcaf17:NM_001165981:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: