BtaEX6009084 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25047795-25051360:-
Coord C1 exon
chr2:25051251-25051360
Coord A exon
chr2:25048578-25048668
Coord C2 exon
chr2:25047795-25047878
Length
91 bp
Sequences
Splice sites
3' ss Seq
AATCCTTTTTACCTTTTCAGAGT
3' ss Score
10.29
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCAAAAAATGGGATCCAAGAAATGGAATGTTGTTCTTTAGAATCTGATTGGATCTACTTCCACCCTGATGCTTCTGGCAGAATAATACATGTTGGCCCAAATCAGGTCAA
Seq A exon
AGTTTTAAAGCTAAGTGAAGTAGAAAATAATAGTGCCCAGCATCAGATCTCTGAAGATTTTGTCATTTTGGCCAACAGAGAGAGGAACAAA
Seq C2 exon
AATGAAAACCTACCCACTGTTACAGCTTCTGGACGGGTGGTAAAAAGAAGTTTTACCATTCTGGATGATGACCCAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGTTCTTTAGAATCTGATTGGA
R:
TCTTGTTCTGGGTCATCATCCA
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]