DreEX6034821 @ danRer10
Exon Skipping
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3532374-3534460:-
Coord C1 exon
chr9:3534351-3534460
Coord A exon
chr9:3532793-3532880
Coord C2 exon
chr9:3532374-3532454
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTCCTCTTTTACAGCAT
3' ss Score
10.05
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCAAAGAACGGCGTCCAGGACATGAAATGTGACTCTCTAGAAGTGGACTGGATCTTTTTTCACCCAGATGACTCCGGTCGAATCATTCATGCCGGGCCCAGCACAATAAA
Seq A exon
CATTCTCAAGATCATGGCGGAAACAGGATGTGACTGGAAGTATGAGATCATCACAGATTTCTCCATCACCGCTGCTCGTGACAGTAAT
Seq C2 exon
GCCTCTCAGGTGATTGTGACCTCTTCTGGCCGTACAGTTAAAAGGAGATTTCAGATGTTAGACGATGACCCTGCACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909-'12-14,'12-12,13-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGTCCAGGACATGAAATG
R:
CTCTTGTGCAGGGTCATCGTC
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]