RnoEX6017366 @ rn6
Exon Skipping
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57667251-57670575:+
Coord C1 exon
chr3:57667251-57667360
Coord A exon
chr3:57669395-57669482
Coord C2 exon
chr3:57670492-57670575
Length
88 bp
Sequences
Splice sites
3' ss Seq
GAATTCTTTTTCCTTTCCAGAGT
3' ss Score
9.55
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GCAAAAAATGGAATCCAGGAAATGGAATGTTGTTCACTAGAATCTGACTGGATCTATTTCCACCCTGATGCTTCTGGAAGAATAATACACGTTGGCCCAAATCAAGTCAA
Seq A exon
AGTCTTGAAGCTGAGTGAAGTAGAAAATAATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTGGGCCAATAGAGAAGACAGA
Seq C2 exon
AAGGAAAACTTAATCACGGTTACAGCTTCTGGACGTGTGGTGAAACGAAATGTCAACCTTCTGGATGATGACCCAGAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAATGGAATGTTGTTCACT
R:
TCCTGTTCTGGGTCATCATCCA
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]