GgaINT0046310 @ galGal4
Intron Retention
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18290578-18293374:+
Coord C1 exon
chr7:18290578-18290744
Coord A exon
chr7:18290745-18293230
Coord C2 exon
chr7:18293231-18293374
Length
2486 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
ACTTATGTTATTTTTCCAAGGGT
3' ss Score
6.23
Exon sequences
Seq C1 exon
TTGAACACCCTTTCCTTATTGCTGTAAGAGATAATATAATTTATGGAATTTCTCTGAACCCTGAGGAGAAGACCAATGATGCCATGGTTCCAATAGCAGGAGTTCAAAATGGTGTTGATGTTGACTTTGATGACTCAGAACAGATGATCTATTGGGTTGAAAATCCA
Seq A exon
GTAAGTTAGTATTTGTGTTCAGAATGCATGCTAAAATAAGGCTTCCTACTTTAAAGCAATGTTTATGATTGAAATATATTAGCATTAAAGGTAGGAATTTTAATAATTATAGTTGAAAAGAATGAAAGACTTTTTCCCTAGGATATATGAGAGAGACTTCATCTCATTTGTACATTAGTTTTCATGTTTGTTCACCACAATATTTAATTAAGTCTATTTCTTGCAGAGACATGAAGACCAGATAGCACTGACAGAACTGTACTCTCAATCCTTCGCTGTAGTCTGCTCTTTCACCTGTCTATTGGCTTAGAACTTAACTCTACAGACAGAGCTGAAAGAGTTCTCCATGAACATAACACATTGGACCAGTGGCACTAAATACTAAGATGAAATTACATACCACTAGAATGAAATTGCATACTTGCATAATTTGGTTTCTAATCTGAGCATTTCATGGAGCATTGAGTACGGAGGCATCCTTTTCTTAAATAGAAGAAAAGGGTGGAAAAGTCACAGGTAGCAGATACAAGGCTAATATTTTTTAAAACTAGTTCAGAATAATTTTTAATAGATCATTATAATTGTTTGAATAAGTATCTTTAATTACTCTGTGGAAGCCTGGGAGATGGATCTGGTAGGAAACTTACGATTCAGTGTTATGTCTCTTCACTCTTGGAAACTTAAAAGCAGTTGATAAATTCTCAGGAATCTATTTGATCCTCCGTGCAGTCTGAAAAAATATTCTTGACACATCTCAGCCAGCAGATAGATACAGCTGACATTTACAGGAGGTCAAACAGTTTAGTAGGTGGTCATGGGCTGATGTATCCATTAACACAGCTGGCAAGTGAAATGCCAGGAGCCATGGCAGGCTGAGTGCAGATAAGCACTGTATTTTAGTTAGATCTTCAGCTTCAGCCTGACAGATGAATGACTATGGGCTGTGACCCCTACCTCTGCCCATGACCTGCAGGTCCCAAGCTGCCATTGCTCACCTGCGGAGCTGTGGCATCTGTATCAGTTGTGAATTTCTCTGTGAATAAGATACTCCTTCTGTTTATAATAGCAGAAGCATATTTGCCTACTTTGTTTCCTTGTCCATTATCACAAGGCATCTTTCATAACAACTTGCTTCTGCTTCCATCCATTGCATGTTTGGCTTTTCTTATGAGTTTGTCTACACCTACATAGTTTGTAGCTGTAATTTCATTCCCAGTTTTGACAACAATTGAAGCTTTAGTTAGATCTCAAGAAAACATCCATCCTCTTGTTCACCTTGTCTGAAGCAGGAAACAGAGAACTCACTGTCAGGGTCCTCACATCTATCTGAGAAACACGTCCAGAATATTTTTATCTTCAGCTATCATGTTATATAGGTTATTTAAAAGCAAATGCCAGTGATAGGCAGAAGAAATCATAGTGGTCTTCGAAGTGAAGTACTTGCGATACCATACACTGGCTAGAAGAAATTATAAATATCCAGCATTCATTAGACTTTCAAAGTAGGATTTAAAACAGTACAGAAAATGATCCTTCACTGCTAATTTTTCTGTGGGCCTAAGGATTCAAGTACAGGTTAATTGTCAAATAGCACAGTTTTGTTAGATTTCAGCCAATGGCACTATGCTGGTGTCTAAGCAAGTACACTTATTTCAGTGAGCAGTGAATTTGGTCTTGACATCATTCTTGACATCATTTCCCTTTCTGAAATGCCATTTTCAATTCTGCCCTGAGGTAATTCTGTTAGATGGTATATTAACAAAGCAATTAATACTATATATGGACCTAATGATTCCCAGGTGATTTTTCTAAAGCAATTGTTCTGCAGAACTCCTGTAAAACTGAAGCTACTGGAAGAAAACTCAGATGGACAGCTACTGTAACCACTTCAGATCTCAGTGTAGCTTGTCTCTCTGTTTTTGTATCATGCTTTAACATCATGCAGCTAATGCTATTGAGCCTGCAAGTGAGAATTTGTTTCAGAGATCATTCTGTGAAAACTGCAGGGTTAATCTGAATTTTGATTCTTCCATTACAGTTTGTTAGAACTTAGGTTCTTCTGTATTTATGCTTATAGAGAACACTATTTTCCTTTACTAAATTTGAGCTTTATTCAAGCTGGCTAATTGAGGTATCCTGGTAAAAATTTTTTGAGAATAAAGTACAAATTACAGTAGTGTGCCTATGTATAGCTTAAAAATAGACAGTTCAGGCTCATGTTATATAGCCATTTTACTTCTGTGAATCACTTTGGTTAATGAACTATAATGCCTCTTTATACCATATAGTTACAATTTACAGTAATTTTTTTTACCATGCTTATGAATTGAGCATATAAAAATACTACTGCTAAATTTTCATTTTTCTAAGAAAAGATTGCAATATAAAGTATATGCTCACATGGTTGGAATAAATCAGGTTTTCTTTTGTTTGTTTGTTTTTGATGAAGCTGCTCTGGATGTTTACACTTATGTTATTTTTCCAAG
Seq C2 exon
GGTGAAATTCACAGAGTGAGGTCAGATGGATCTAACAGGACAGTTTTTGCTCCAGCAGCTGTTATTGGTGCTCCGATTGGCCTAGCATTGGACTGGATATCTGCAAACCTTTATTACAGTAACCCAGGAACACAGTCAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858:ENSGALT00000017651:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]