MmuINT0092599 @ mm9
Intron Retention
Gene
ENSMUSG00000027070 | Lrp2
Description
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
Coordinates
chr2:69333728-69334552:-
Coord C1 exon
chr2:69334386-69334552
Coord A exon
chr2:69333872-69334385
Coord C2 exon
chr2:69333728-69333871
Length
514 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
ACCCTCGTTTTTCTTTCCAGGGT
3' ss Score
11.49
Exon sequences
Seq C1 exon
GCGATCAACCTTTCTTGATATCCGTAAGAGAAAATGTAATTTTTGGAATTTCCCTTGATCCTGAGGTGAAGAGCAACGATGCCATGGTCCCCATATCGGGGATACAGCATGGTTATGATGTTGAATTTGATGACTCAGAGCAGTTCATCTATTGGGTTGAGAATCCA
Seq A exon
GTAAGTTTTGGATGCGTTCAATGTGTGTGATCATTATTTAAGACAAAGTTCCCTCAGGGAATTCCAGCAAGGTGTTTAGTGGAGCTCCTGGGGGACTTTGGATTAGAATCCTTGCTTGGGGCAAGTGCTTCTCCAGTACCCTTCTGCTTGAGATTCTTCCCTTCTTCATGGAAGCAATCTGCCACAGTGGGAAAAAAAGCCAGGAGAAAGGAAAAAGAGGATGAAGAACTCTTAGTGTTTGCTGTCTGTTTTGCTTCGTGACTTCTGAGCCACTTTAGAATGTGCTTTTAATTTTTATTTTTGAGACTCTGTACAGTGAGTTTTTTTTCCTGACAGGTCAGGTACTCATCTTTGCTCGTCCTTCCCCCCCACCCCCCATCCCCACGTGTGAGGAGCATTAAGAAAACACTGGCAGCCAGCAGAGGCTGTCGGGAGAGAAGAGGAGGGCTTCTGTATAGGGGCTGGGCTGTGTCTGCGTCTCAGATTAGCTCACCACCCTCGTTTTTCTTTCCAG
Seq C2 exon
GGTGAAATTCACAGAGTGAAGACCGATGGCAGCAACAGGACAGCGTTTGCTCCTCTGTCTCTGCTGGGGTCTTCTTTGGGCCTGGCCTTAGACTGGGTATCAAGAAACATTTATTATACCACTCCTGCAAGTCGGTCCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027070-Lrp2:NM_001081088:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATCAACCTTTCTTGATATCCG
R:
CTCAATGGACCGACTTGCAGG
Band lengths:
311-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: