GgaINT0046553 @ galGal3
Intron Retention
Gene
ENSGALG00000003578 | FN1
Description
NA
Coordinates
chr7:4362118-4363283:-
Coord C1 exon
chr7:4363173-4363283
Coord A exon
chr7:4362806-4363172
Coord C2 exon
chr7:4362118-4362805
Length
367 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CTTTCCTTCCCTCCCGACAGAAC
3' ss Score
12.31
Exon sequences
Seq C1 exon
GGCTGGCGTTGTGACAACTGCCGCAGGCCTAGCGTGGAGGTGGCCCCCGAAGGCTCAGCTGGCCACACCTACCCCCAGTTCACACAGAGATACCACCAGGCCACAAACACC
Seq A exon
GTGAGTACACCTGTGGGTCTGGGCTGGGGCGTGGGCAGAGGGGCGCTGGGTAGGGCGTGAGGGGTGAGAGTAGCACGCAGCTTTGTGCCTGATCGAGAGCCGTCGCACACTATGATCAGCACAGCACCACTCCGCGCAGCGCAGCGCAGGACGCACGCTTGAGCTCACACTTTCACACTGGTGGGACTCACTCCGTGGCACTGGGAGGTGCCTGCATGCTCCGGCCGAGGCGTAGTGCACGTAGTGATTTCCTAGTTGTCACCTAATGCTGCAAGCCAGCTTTGTGCTGGGAACACTTCCCAGCCCAAACCACAACAGTGTCTGCCCTGACGGGACAAGGCTAACTGCTTTCCTTCCCTCCCGACAG
Seq C2 exon
AACGTCAACTGCCCCATTGAGTGTTTCATGCCCCTAGATGTACAGGCAGACACACAACATCCACGGGGAAAGTAACATCCAGCAAGACTTCTTGCGGCAATGGCAACAGACAAACCAAAGCATAAATACTTATCTGCCACGATTACCATCCAAACTGGAGTGATGCTAGCAAAACTGCATCTTTGAGAATGGCCCTTTGCTCCGGAGCCATTTTCCCAGCTTAAGCTCAACTCACAGCTTCTCCAAGCGCCACTCTTGGAGTGTTTCAGACTTTTCTCACGATTGGTAGCAATCTTGTTCTTGCTCAAAGTGTTGAATGCCAGTCAGTATTTACAAATTCAAATAGGGGGAGGGGGAAAAAGCGAGGGTGGTGGGGGGAGATACTAAATCACAAACTGGTGGGGGATCAGAACGTCGAGGGGGAGGGAGAGAGTTGGAATTGAAAGGTTCCCATACTATGCAAACAACATTTGAGTCCAACGTTCCCGACCTTTAGAGATAGGAAAGTCCACCAAACACTTCTGCTTTCACATAAGCGTGCAGCCAGCAATAAGATAGGAACAGCAAATCCAATCACTGTGATATTTAAAATATGCACAGTCCTGATTCTTTCTCCATGATCCTAGTATTTTTCTAGCTGTATCTTTGTATCTCATACTGTTATTTATCAGTTTTGTTCCCCTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578:ENSGALT00000005664:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0003913=fn1=PD(8.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATACCACCAGGCCACAA
R:
TGGCATTCAACACTTTGAGCA
Band lengths:
348-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]