GgaINT0046648 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:23568553-23571989:-
Coord C1 exon
chr7:23571831-23571989
Coord A exon
chr7:23568741-23571830
Coord C2 exon
chr7:23568553-23568740
Length
3090 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
GTTTTGTTTTCTCCCCTCAGACC
3' ss Score
11.26
Exon sequences
Seq C1 exon
GTGTTCCAGTACCCCAAGGCCTCCCTTTCCATAGAAAAAGTCTTGCCCATGCACCAGAGCAGCATCAATGGGGTAGAGGACATGTCCATGCTGGGAGACCTGCACGAAGCTGCCATCCTACTCAACCTGCACCAGCGCTACCAGCAGGGTAACATCTAC
Seq A exon
GTAAGTGCTGAGCTGGGCCACGGCAACAATGTGTTGTTTATCTTTGGGGCTGCCACTTTGCATGGGAAACACTGATTTCAGCATTGCTTCCTGAGCATTGTTTCGTGTGGATAAAAAGGGATGGGTTTTTTTCTGCTCTGTGCCTTCCCAGCTCCATCAGCCCCATGAGATCCTTTTCCTACTATAGGGGCCTCTTTGCCTATGTAGAACTTCCAAAATGTGGTCTTCACCTATAGGATTTGTGTATCCACCATGAACGTCTGCCACTGTTGCTCTTCAAAGGTTATAGATGGCCAAACAGACAGGAAAGTACAACAGGCTGTTGTTGGGTATCACTCCTGAAATCAGCTAGGAAAGCAAACCTGTTGCCTACTTTCCTGCTTTTACAAGCGGTTGTGCTTTTCTGAGTCGCTCTGCTCTCCTGGCACAGCAGAATACCAGCACATGTCGTGGTTTCCCTCTTGGCCCCGAGGAAGGAGGCAGGCATCAGGGGAGGGCTGTGGGAGGGAGAGCACTCTAGGATGAGGCTGCTGGGGGGCAGTGTGCTCTGCTTAGGCTGAACGTTGTGAAGACTGCCTTGGGCTGCTTTACCCCTACCTTGCCTGTCCATCCTCTGAGCATACTCAGAATTTTTCAGATTATGACAGGAAAAATGTAAATCTGTGTTGCATAGCAACTGTTCCTAAGGCAACAGAACCGTATGCACCTGTATTCCAGGAAATGATCAATAAAGTGACCTGGTTTCTGAAGCACCTCCTGTGCTGGAATGAGGAGAATGAAGTGCCCTTCTCACTGTGCCTGGCACCAGAAGTGGCACACTGCTGCCTCTGACCGTGTCACCACAGTCCTATCCCTCTGCTCCTCATCAGTACTAGCTCTGTGCCTCCTCCAGTCATGTGGAAAGGTGTTAATGTTTGGACGTGGTGTCATTTTTTGCCTGCACGCATTGTGTATTCAGTATGTTCCTTCACAGCTGGAATGTAGTAGGCCAAGGTTGCAGGTGAAGCTGTACCAAGGGGAGTTATGCCTATAGGTCAGGGCAAAAAAGATCTGGAAGAAAATCAAGGAGATCAGAAACAGGCAAGAAATGTCATTGTTCTATGGAAAACAAAATTACCTGAAGGAATGGATAACTCAGAAGAACCAGTATTTAAAATAATAACAATAAATGAAGAAGAAGAAGAAGAGGATGGCAATCGGAGAACTTTTCCAAAGAAATTTTATTCCAGTTCTACCAAGCTACTTCAGAAAATGTGAGCACAGCAACAGCCTGCACCATTTACGAGTACCCTTTCATTCCTGCAGCTCCGGTATCCATTGATAATCCATGATTTGTGGGATGTATGAACGACCCATGGGCTGTCCCACATGTGTGCTGCCTCTAGTTCTGCCATGCCTACCCACCCGTGCAGGACCCGAGAAGCAGGCATGACCAGAATGATGTGTCCTGCTCTACAGCGTTGTCTGGGGAAGATGATAGGATCTGAGAATGGCTTGGGTTGGAAGGGCCCTCATAGACCATGCAGTCCCAACCCCTTGCCATGGGCTGGCTGCCACCCCCCAGCTGAGGCTGCCCAGGGCCCATCCAACCTGGCCTTGAGTACTTCCAGGGATGGGGCACCACAGCTTCTCTGGGCATCCTGATCACTCCTTGCTAAGAGAGTGGCTATTATGTACGTGGTTGATAACAAATGCTGCTGCTACTATAACTTGTGAGCAGAAATCATCTATAATGGGCTGCAGGTGATGGAGACTGCAACTGGGAGATGGAAAAGTTTCCTGGAAACACCGTTGAGAGACATGGCTGTAGTGGAAATCCTGGCTTCAGCAGGAGACCTATTCCTCAGGAGGCATGAAACTAGATTGGGAAGTGCAGAATAAAACACGGGAGAAAAAGTCTGTGAAAGTCTGGGAGAAATGTTGGGATGGACTTGTAGACATGTGCCTTGCCATCTCCAGATGATACCTGTTGCTCAGCTGGTTGTATAGCACACTTTCCCAATCTGTTTTTTCTTGCTCAGTGCTTTCCTTTTGGCTCCCACTTGTCTTGCCAAGAGGAATCTACTCTCTTATTGCTTCTGTCACCAGTCAACTGTATTTCTGCCTACAAGGCTCTGTATCAGAGCGCCTTCAGGTCTTGTTCCCTTCCTGCCCACTTGTGTGTGTACTGCTGGTAACACAGCGAGGCCCAGGTGATGGTTTGTCCCTGGTGATCTGTGTTGCTGCTTTACTAAATAACACTTAAATATTTGGTGACTACTGCATCTTATTAGTCCAGCTTCTGGCTTCAGAGCTTGGCATTACAGTGTAACAGTGGGAAAGCATGTGTCTTTCTCATCACCAGATGCTCCACTTACAGCTTCTCCAATGGATGCATGCAAATCCTTTTATCTCTACGTGATGACTGGTAGTTCATGGGTTGGCAGAAGTACTATGCAGCACTCCAAGGGTTTCATCTGACACCCTGCTGAGAGTGGCTGCTCCTGGAGTGGAGCAGCAGCCCTGTGAAGGAGGCCCCCACCCCAGCAGCAGGATTTAAGCTGGACATTGACCACACTGTGGATTCATTGCTAGGAGGTAGCACCATTGCTCTGTACTGCAGCTCTGAGACTAACTGGATTTGAGCTGGCTGGCTGAACCGAGAACCAGAATGGATTTCCTTCTGACTTCACAAAAGAAAATGTTTGAAATTGGATAAATTGGCTTCAGGTATTTTATTTTAAACCTTACAATCTCTTTTCTTAAACAGAAGTATTTTCAAATGAAATATTTTCAAAATAACGTATTTAGGAAATGTCAAAATATTTTGACTAGAAACCCTTGAGCTTCAGCTTTCAATCTCGATTTGGTTTTACCACGTGGTTTAAGCTGCTCCAAACTGCATTTTTTCAGCAGCAGCAGAATGATACACTTTAATGTCTCTTGTCTTCGTGTCCCCTCATTGTTCAGGAGCTGCTTGAACCCATCCAAGCCCCTTGCACTGGGAATCTTGGGGAGGAGCCGTGAAGATGTCCTCTGATCCTCCTTCAGTCCTAGTTTTCTTTTTCCTGGAGCTTTATGTCCTTGCCGTGTTTTGTTTTCTCCCCTCAG
Seq C2 exon
ACCAACATTGGCTCCATCCTGGCGTCGGTGAACCCCTACAAGCCCATCCCTGGTCTGTACAGCATGGATGCCATAGAGCTGTACAGGCAGCACCGCCTGGGTGAGCTGCCTCCCCATATCTTCGCCACCGCTAACGAGTGCTACTGCTGCTTGTGGAAGCGTCACGACAGCCAGTGTGTTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(75.7=52.8)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]