GgaINT0046648 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21481060-21484495:-
Coord C1 exon
chr7:21484337-21484495
Coord A exon
chr7:21481248-21484336
Coord C2 exon
chr7:21481060-21481247
Length
3089 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
GTTTTGTTTTCTCCCCTCAGACC
3' ss Score
11.26
Exon sequences
Seq C1 exon
GTGTTCCAGTACCCCAAGGCCTCCCTTTCCATAGAAAAAGTCTTGCCCATGCACCAGAGCAGCATCAATGGGGTAGAGGACATGTCCATGCTGGGAGACCTGCACGAAGCTGCCATCCTACTCAACCTGCACCAGCGCTACCAGCAGGGTAACATCTAC
Seq A exon
GTAAGTGCTGAGCTGGGCCACGGCAACAATGTGTTGTTTATCTTTGGGGCTGCCACTTTGCATGGGAAACACTGATTTCAGCATTGCTTCCTGAGCATTGTTTCGTGTGGATAAAAAGGGATGGGTTTTTTTCTGCTCTGTGCCTTCCCAGCTCCATCAGCCCCATGAGATCCTTTTCCTACTATAGGGGCCTCTTTGCCTATGTAGAACTTCCAAAATGTGGTCTTCACCTATAGGATTTGTGTATCCACCATGAACGTCTGCCACTGTTGCTCTTCAAAGGTTATAGATGGCCAAACAGACAGGAAAGTACAACAGGCTGTTGTTGGGTATCACTCCTGAAATCAGCTAGGAAAGCAAACCTGTTGCCTACTTTCCTGCTTTTACAAGCGGTTGTGCTTTTCTGAGTCGCTCTGCTCTCCTGGCACAGCAGAATACCAGCACATGTCGTGGTTTCCCTCTTGGCCCCGAGGAAGGAGGCAGGCATCAGGGGAGGGCTGTGGGAGGGAGAGCACTCTAGGATGAGGCTGCTGGGGGGCAGTGTGCTCTGCTTAGGCTGAACGTTGTGAAGACTGCCTTGGGCTGCTTTACCCCTACCTTGCCTGTCCATCCTCTGAGCATACTCAGAATTTTTCAGATTATGACAGGAAAAATGTAAATCTGTGTTGCATAGCAACTGTTCCTAAGGCAACAGAACCGTATGCACCTGTATTCCAGGAAATGATCAATAAAGTGACCTGGTTTCTGAAGCACCTCCTGTGCTGGAATGAGGAGAATGAAGTGCCCTTCTCACTGTGCCTGGCACCAGAAGTGGCACACTGCTGCCTCTGACCGTGTCACCACAGTCCTATCCCTCTGCTCCTCATCAGTACTAGCTCTGTGCCTCCTCCAGTCATGTGGAAAGGTGTTAATGTTTGGACGTGGTGTCATTTTTTGCCTGCACGCATTGTGTATTCAGTATGTTCCTTCACAGCTGGAATGTAGTAGGCCAAGGTTGCAGGTGAAGCTGTACCAAGGGGAGTTATGCCTATAGGTCAGGGCAAAAAAGATCTGGAAGAAAATCAAGGAGATCAGAAACAGGCAAGAAATGTCATTGTTCTATGGAAAACAAAATTACCTGAAGGAATGGATAACTCAGAAGAACCAGTATTTAAAATAATAACAATAAATGAAGAAGAAGAAGAAGAGGATGGCAATCGGAGAACTTTTCCAAAGAAATTTTATTCCAGTTCTACCAAGCTACTTCAGAAAATGTGAGCACAGCAACAGCCTGCACCATTTACGAGTACCCTTTCATTCCTGCAGCTCCGGTATCCATTGATAATCCATGATTTGTGGGATGTATGAACGACCCATGGGCTGTCCCACATGTGTGCTGCCTCTAGTTCTGCCATGCCTACCCACCCGTGCAGGACCCGAGAAGCAGGCATGACCAGAATGATGTGTCCTGCTCTACAGCGTTGTCTGGGGAAGATGATAGGATCTGAGAATGGCTTGGGTTGGAAGGGCCCTCATAGACCATGCAGTCCCAACCCCTTGCCATGGGCTGGCTGCCACCCCCCAGCTGAGGCTGCCCAGGGCCCATCCAACCTGGCCTTGAGTACTTCCAGGGATGGGGCACCACAGCTTCTCTGGGCATCCTGATCACTCCTTGCTAAGAGAGTGGCTATTATGTACGTGGTTGATAACAAATGCTGCTGCTACTATAACTTGTGAGCAGAAATCATCTATAATGGGCTGCAGGTGATGGAGACTGCAACTGGGAGATGGAAAAGTTTCCTGGAAACACCGTTGAGAGACATGGCTGTAGTGGAAATCCTGGCTTCAGCAGGAGACCTATTCCTCAGGAGGCATGAAACTAGATTGGGAAGTGCAGAATAAAACACGGGAGAAAAAGTCTGTGAAAGTCTGGGAGAAATGTTGGGATGGACTTGTAGACATGTGCCTTGCCATCTCCAGATGATACCTGTTGCTCAGCTGGTTGTATAGCACACTTTCCCAATCTGTTTTTCTTGCTCAGTGCTTTCCTTTTGGCTCCCACTTGTCTTGCCAAGAGGAATCTACTCTCTTATTGCTTCTGTCACCAGTCAACTGTATTTCTGCCTACAAGGCTCTGTATCAGAGCGCCTTCAGGTCTTGTTCCCTTCCTGCCCACTTGTGTGTGTACTGCTGGTAACACAGCGAGGCCCAGGTGATGGTTTGTCCCTGGTGATCTGTGTTGCTGCTTTACTAAATAACACTTAAATATTTGGTGACTACTGCATCTTATTAGTCCAGCTTCTGGCTTCAGAGCTTGGCATTACAGTGTAACAGTGGGAAAGCATGTGTCTTTCTCATCACCAGATGCTCCACTTACAGCTTCTCCAATGGATGCATGCAAATCCTTTTATCTCTACGTGATGACTGGTAGTTCATGGGTTGGCAGAAGTACTATGCAGCACTCCAAGGGTTTCATCTGACACCCTGCTGAGAGTGGCTGCTCCTGGAGTGGAGCAGCAGCCCTGTGAAGGAGGCCCCCACCCCAGCAGCAGGATTTAAGCTGGACATTGACCACACTGTGGATTCATTGCTAGGAGGTAGCACCATTGCTCTGTACTGCAGCTCTGAGACTAACTGGATTTGAGCTGGCTGGCTGAACCGAGAACCAGAATGGATTTCCTTCTGACTTCACAAAAGAAAATGTTTGAAATTGGATAAATTGGCTTCAGGTATTTTATTTTAAACCTTACAATCTCTTTTCTTAAACAGAAGTATTTTCAAATGAAATATTTTCAAAATAACGTATTTAGGAAATGTCAAAATATTTTGACTAGAAACCCTTGAGCTTCAGCTTTCAATCTCGATTTGGTTTTACCACGTGGTTTAAGCTGCTCCAAACTGCATTTTTTCAGCAGCAGCAGAATGATACACTTTAATGTCTCTTGTCTTCGTGTCCCCTCATTGTTCAGGAGCTGCTTGAACCCATCCAAGCCCCTTGCACTGGGAATCTTGGGGAGGAGCCGTGAAGATGTCCTCTGATCCTCCTTCAGTCCTAGTTTTCTTTTTCCTGGAGCTTTATGTCCTTGCCGTGTTTTGTTTTCTCCCCTCAG
Seq C2 exon
ACCAACATTGGCTCCATCCTGGCGTCGGTGAACCCCTACAAGCCCATCCCTGGTCTGTACAGCATGGATGCCATAGAGCTGTACAGGCAGCACCGCCTGGGTGAGCTGCCTCCCCATATCTTCGCCACCGCTAACGAGTGCTACTGCTGCTTGTGGAAGCGTCACGACAGCCAGTGTGTTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(46.7=75.7)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]