RnoINT0097446 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24801867-24802897:-
Coord C1 exon
chr18:24802745-24802897
Coord A exon
chr18:24802052-24802744
Coord C2 exon
chr18:24801867-24802051
Length
693 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TTACCTGCTCTCTTTCCCAGACC
3' ss Score
11.46
Exon sequences
Seq C1 exon
GAACACTGGATCTCTGCTGAAGACCTCAGCACCCTCAGGCCTATGCACCCCAACTCGGCCCAAGGAGTGGATGACATGATTCGCCTGGGGGACCTGAATGAGGCCGGTGTGGTACACAACCTCCTGATCCGATACCAGCAGCACAAGATCTAT
Seq A exon
GTGAGTTCACCGGTGCTGTGTCCTCGGGGAAGCTGAGGGGTCTGGGGTTTGTCACTGCTCCCTTTATCGTTCCTCCGTGATTTGGCCCAGGTGCTCCAGCCTTCTCAGCCTCTGCTGCAAATCCAAAGAGGCAGAAGCGAGACTGGAGATGGGGCTTAGTTGATGCTCGCCTAGAGTGCAGGAAGCCCTGGGTTTGATCCCCAACCATATAACCTGGGCACGTGTCATGTGTAGCACTAATCTCAGCACTAGGGACATAGTGTCAGGAGCATTAGAAAGTCAAGGTCAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAGAAAAAAAAGAACAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGTCAAGGTCATTCCCAGCTATGTGAGTTCAAGACTAGCCTGGGCTACGTGAGACTGCTGGGACATCATACTCTGGGGATTGGCAGCTAGTACAGAGAGATAGCATAGTGCCAGGCACACATTAGGTACCCAGTAACTGCTGCCCCCAGGAACTCATGGTCCTAGCGGATGCTCCGTCTTCCCTGAGGAAGGAGCTGGGCAGTGGAGAGCAGCTATGGAGCCCAGCTCAGCAGTTCTGTCCCTGGACTGGCAGGCACTAATTACCTGCTCTCTTTCCCAG
Seq C2 exon
ACCTACACGGGTTCCATCCTGGTGGCGGTGAACCCATTCCAGATGCTGCCCCTGTACACCCTGGAGCAGGTACAAATCTACTACAGCCGCCACATGGGCGAGCTGCCTCCCCATGTCTTTGCCATTGCCAACAGCTGCTACTTCAACATGAAGAAGAACAAGAGGGACCAGTGTTGCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(29.8=54.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(64.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGATCTCTGCTGAAGACC
R:
TGATGATGCAACACTGGTCCC
Band lengths:
334-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]