GgaINT0031391 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:836924-839512:+
Coord C1 exon
chr9:836924-837076
Coord A exon
chr9:837077-839327
Coord C2 exon
chr9:839328-839512
Length
2251 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TGCTCATAACTGTTTTCCAGACT
3' ss Score
5.97
Exon sequences
Seq C1 exon
GAGCACTGGATCACAGCTCGGAACATGCACATGGTTCGCCCAATGGACCCATCCACTGCACAAGGGGTGGAAGACATGATCCGTCTTGGGGATCTCCACGAAGCAGGCATGGTGCATAACCTCCTCATCCGCCACCAGCAGCACAAAATCTAT
Seq A exon
GTGAGTGCCAATGTTACTGGACATGGTACTTTTAGGAATGACCTCATCCACCTTTAGAAGGATGACTTGAGTAGCCTGCTAACTTCCTTTCATGCATAGGGCCCTCCAATTCCTTTACTGACTCAGAGTACCAAGGAGACATCTTTTTTCTCTTCCTCCATCCAAGTAATTTGGCTGTGAAAATGGGATTTAACACTAGTCTCTGAAATTGCAGAGATATGCAAAGGTAGTGACCCTGCTCACTTTCTCCTAGAGTGATCATTTTCAGCAGCAACTGATACATAGCTCCATGTTACAGCTTAGTGCTGGGTGCACGTGCTGTTACCACCTGCAGCTGTGGCTCTGGATCAATCTAACCAGTAAATGGTGACATTATTTAGATTGTGCTCCAATCCACATCACTATTTATTTGATTTTGATGTAATGAAACAGGTAAAGAATAGATCTGCATTTTTAGGACATTTGGTTTCACTTTCTGTCCATTACACATTTAATCTGTGAGTTTGAACAATTTGACATTTTCAGGTTTCTTGTTCCCTAGTTCCTAGTTTGCAATATGATGACAACATTCAAACTTTTTCATACGTCATCTCCCATGTTATATACACTATTGTATGGCAAACAGGTATACAGATTGTAAGATAAATAGGTATAGGACCAGAGAGATTATCACATTTACAAAGGAGTAATGAAATAAAGAGCTTACCCATGTCCTGGACTCACAGAAAGGCTCCAAGAGGGGTGATCTCCAGATAGAGATCCTTCCTCCTTGGGAGTCAGCCCTTAAATGGGGACTAGGAGCCTGGTTCCACCCCTTCTGGTCACTCAGGTGAAATTGCATTCACCTGTGCCCCTGCAGCTGACTCAGTGCTCACCTCAGGTGGTCAATCAGAGGTTCAGGCCGTGATTATACAGTTCCCATACACACTACGTACAGGAGAGGAGCTGTCTCTTACAATACAAACATGGTGATGTTCCGTGTAATGAAGCTGTGATTTTGATATATGCTGTAGTTACCTGGATGAGGGCATTGAGTGCACCCTCAGTAAGTTTGCAGATGACTCCAAGCTGGCTGGAAGTGTTGATCTGCCTGAGGGTAGCGAGGCCCTACAGAGGGATCTGGATAGGCTGGATAGCTGGGCTGAAGCCAATGGGATGGGATTCAACAAGACCAAATGCCGGGTCCTGCACTTTGGCCACAATAACCCCAGGCAACGCTACAGGCTTGGGGCAGAGTGGCTGGAAGACTGTGTAGAGGAAATGGACCTGGGGGCGTTGATTGACGCTAGACTGAACATGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGCCAATGGCATCCTGGCTTGTATCAGAAATAGTGTGGCCAGCAGGAACAGGGAAGTAATTATCCCCCTGTACTCAGCACTGGTGAGGCCGCACCTCGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGTAAGAAGGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACAAAGCTGGTGAGGGCTCTGGAGCACAGCCTTATGAGGAGCGGCTGAAGGAGCTGGGATTGTTCAGTCTAGAGAAGAGGAGGCTCAGGGGAGACCTTATTGCTCTCTTTAACAGTGGCCTGTAGTAGTGATCTGGGGGTCAGCCTCTTCTCTCATGTGACTAGTGATAGGACTAGAAGGAATGGCTTCAAGCTGCGCCAGGGAAGGTTCAGGCTGGACGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTGCCCAGAGAGGTGGTGGAGTCACTGAGCCTGGTGGTGTTCAAAGAGCGTTTGGATGTTGTGTTGAGGGACATGGTTTAGCGAGAACCATTGGTGAAGGGCAAATGGTTGGACTGGATGATCCTGTGGGTCTTTTCCAACCTTAGCGATTCTATGATTCTATGATTCTACAACTACCAAGAGGTGCATACAGAACCACTATGTTAGATTCTAGCAGTCCGCAGTTGTGTCATGTACTTCTTGAACAATACATTGTAATTTCCAAGTCCTTGACACTCTCCTTCATTTCAGTGGAGCTGTTTTTTATAAATACTATATAAGTGCATAAATAACACAACCATAACATTGCCCAACTCATGGCAAGGAACCAGGCTTTTAGATCTCCCAAGTTTCTCTCCTGACTCTACTTAGATCTACTCTGTGCCTTTGGTTGTATTGCTGGTTGCATTTGCTGCTAGAGGTAATGCTCATAACTGTTTTCCAG
Seq C2 exon
ACTTACACGGGATCTATCTTGGTAGCAGTGAATCCATACCAGCTGCTGCCTCTCTACACAGTCGATCTTATCAGGCTCTACTGCAACAAGAGGATTGGAGAGCTGCCACCTCATGTCTTTGCCATTGCAGACAACTGTTACTTCAATATGAAGAGGAATAAGAGAGATCAGTGCTGTGTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]