MmuINT0104621 @ mm10
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32013261-32014356:-
Coord C1 exon
chr18:32014204-32014356
Coord A exon
chr18:32013446-32014203
Coord C2 exon
chr18:32013261-32013445
Length
758 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TTACCTGCTCTCATTCCCAGACC
3' ss Score
10.43
Exon sequences
Seq C1 exon
GAACACTGGGTCCATGCAGAAGACCTCAGCACCCTCAGGCCTATGCACCCCAACTCAGCCCAAGGAGTGGATGACATGATCCGCCTAGGGGACCTGAATGAGGCTGGTGTGGTGCACAACCTCCTGATCCGGTACCAGCAGCACAAGATCTAT
Seq A exon
GTGAGTTTACTGGTGCTATGTCCTCAGGAAGCTGAGAGATCTGGGGCTTGGCACTACTCCCCTTATCGTCACTCAGTGAGGTGGTTCAGTTGCTCGGGCTTTCTCATCCTCTAACACCAAAGAAACAGAAGCAAGCCTGGAGATGTAGCCCAGTTGGTGCTTGCCTAGAGTGCAGGATGCCCTGGGTTTGATTCCCAACCATATAAACTGGGCACAGTCATGGTCACCTTTAATCTCAGCACTAGGGACATAGTGTCAGGAGCATTAGAAATTTAAGGTCATTCCCAGCTACATGAGTTCGAGACTAGCCTGGGCTACATGAGACTGGTTTTTTGTTTGTTTAATATTTTTTTTGTATGTTTGTTTTTAAAGCAAAGCTGGGATATCATATTCTAGGAGCTGGGCAGCTAGTGCAGAGAGCTAGCACAGTGCCAGGCACACAGTAGATAGTCAATAAGTGCTGGCCCTGCTGTAAGCACCCACTGAGTCTGCTCATCCCTCTTTGTGCTGGGCAACCCATTTATTTATCCAACCCATTTTTACTGAGGCCTTTCTAAAACTAGGTAGGGTAGTACACATTTACTATTACTGGGAACAAGCCCCCGGAAACTCGTGGTTCTAGAGGATGCTCCATCTTCTCAGAGGAAGGAGCTGGGCAGCCGAGAACAGCTCTAGAGATGTTGCAGCCAAGGCTGAGGTCCAGCCCAGCAGCTCTGTCCCAGGACTGGCGGGTGCTAATTACCTGCTCTCATTCCCAG
Seq C2 exon
ACCTACACAGGCTCCATCCTGGTGGCTGTGAACCCATTCCAGATGCTGCCCCTGTACACCCTGGAGCAGGTACAAATCTACTACAGCCGCCACATGGGCGAGCTGCCTCCCCACATCTTCGCCATTGCCAACAGCTGCTACTTCAACATGAAGAAGAACAAGAGGGACCAGTGCTGTATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388:ENSMUST00000134663:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(15.1=54.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGTCCATGCAGAAGAC
R:
TGATGATACAGCACTGGTCCCT
Band lengths:
334-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types