DreINT0015014 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28064283-28066258:+
Coord C1 exon
chr6:28064283-28064429
Coord A exon
chr6:28064430-28066073
Coord C2 exon
chr6:28066074-28066258
Length
1644 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
CTGGGAACTTGTTTTGACAGACA
3' ss Score
3.82
Exon sequences
Seq C1 exon
GAGCACAAGATTAAGAAGGAGAGCACTCTGAAGCCCATGCATCCCACCTCAGTGAATGGTGTGGATGATATGATTCGTCTGGGCGACCTGAACGAGGCTGGACTGTTACGAAACCTTCTAGTGCGCTACAAAGAAGGAGCCATCTAT
Seq A exon
GTGAGTTTATAAAGGCACAGTTCACTCAAAAAATGAAAATGCATCAAGTGGTTATTTTTGCTTAGCCTTCACTTCTTTTGACTTTCCTTTTTATCTGTTGAACACAGAAGATTTTCTGAAAGTTGCTGGGACTTTTTAGTAATTTATTTACCTACTATGGAAGTTGATGGATACCAGCTTTCTTCAAAATATATTCTTTTGTGATCAAAAGAAACAAGAAACTCATAAAGTTTTAAAACCACATGAGGGAAAGTAAATGATCCATATTATCCATTTTTGGAAGAATTATCCCTTTAAAGGCAACCTATTATGCAAAAATCACTTTTATAAGTGGTTTAAGCAGTTGTTTGGCAACAATCTGCGAATATAATCAGCTTCTAAGGGTAAAAATGTATTAATTAATTTTTTTCTAATCACACTTGATGAAAACAGTCTGCAGAATCACTTTGATTGACATTCTATCTTTGTACATGATATCAGAGGGGCAAAGCCCCGCTCATTAGTGACTATTTTTTTTTCTTGTTGACAGTCACATTCATTTACTAAGATGACTGAGATTCTTTGGTGTGTGTGAGATACTGTTGAAGACATTCTACTGTATGATTCTGTGCAGTCATCTCTGATCCTGTGTTGTTGAGGGGCAATTGTGGAGAAAAAGAAAACTTAACAAGCTTATAAAAAAGGCAGGTTCTATTGTGAGGTGTGTATCATAGACGAGATGGCACATGGTGTGTGCTATAGACGAGAAAGCACAATATAGAATGATTGACTAATGATTAGTCAATATGATGAATCATGGTTGTCACCCTCTTTTTGAAACGACTCAAGATTAATTCAGCTCTGGTGTTATAGAGATTGATATAGGAAGTCTTACCAACAATGATTAGATAGTGTAATCAATTTCATATGAAATAATGTCAGGTTTTAATTATATAGGTAAGACGAGTGTCTCATTGCTTGAAGCTAAGGGTTTCAATATAGAATGCATTTTTTATAGTATTTATTTACTATATAGTGAGCTCTGCCATGACTTGAATCTTCCTTTGAGAGGACTAATGTATAGTCAGCTTTAGTTACAGCTTACATAAATATATTCATTAAAATAGTTTTTAGCGTTAAGATATGTGAACTCATAAATAACGGAAATGAGGATTAAATTGTCCACTTAATTCACCAGCTTCAGTTCCTTCAGCAGCTGTTCTTTGTCCTTTTCTGTTTTACATCAAGATTGTTACCTTAGTAACAGCCAGTTACAAGTTTAATGAGTGGATTGAACTGTTATACAATATTGACATAACCATTATATAGTAAATCCAACCTTCTACCTTGAAGTCCAGCTGTATAAAACAAGAGCTCATTGCATGAAATAATAAGTGATCATACTATATTTTAAAATATTTTAAGGGGTATATGCACAGCTAGTGTATTTCAGCCACTGATAAACTTATGGTGAAAGCTTAATGTGACTATTTTTAATTTTATAAGGTTTATTTTACATCATCAATGTTGTATTGTCATTAAAATACATTCAGAGTGATTACATGTAGATCTCATTATTTTATTCTGCCAACTTCAGAAACCTCATAGACTTTTATTGCATCAACTCTCAGTAATATTTTTTATCCTGGGAACTTGTTTTGACAG
Seq C2 exon
ACATATACAGGGTCCATTCTGGTGGCAGTGAACCCTTACCAGCTGCTGCCAATCTACACTCCGGAGCAGGTGGAGCAGTACACAGACCGGCGGTTGGGTGATCTCCCTCCACATGTCTTCGCCATCGCTGACAGCTGCTTCTTCAACATGCGCCGCAACCGCAAAGACCAGTGCTGCATCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.1=57.1)
A:
NA
C2:
PF0006316=Myosin_head=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAAGATTAAGAAGGAGAGCA
R:
TGATGCAGCACTGGTCTTTGC
Band lengths:
327-1971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]