BtaINT0098327 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4896785-4898753:-
Coord C1 exon
chr2:4898601-4898753
Coord A exon
chr2:4896970-4898600
Coord C2 exon
chr2:4896785-4896969
Length
1631 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
CCACCTCCTCCCTTCCCCAGACA
3' ss Score
10.56
Exon sequences
Seq C1 exon
GAACACTGGATCCAAGCAGAGGACCTTGGCACTCTCAGCTCCATGCACCCCAATTCAGCTCAGGGCGTGGATGACATGATCCGCCTGGGGGACCTGAATGAGGCAGGCATGGTGCACAACCTCCTGATCCGCTACCAGCAGCACAAGATCTAC
Seq A exon
GTGAGTCTCCCTTGGCCATGTGTGCCCCCACGGCATGCTTGGGCCACACATGCTGCGCTGGCTGGGGAAGCAAACCGTGCCCCAGGCACACCTGGCTTAGTCCCTGAGCCCCACACCCTTACGGTGTGAGGATGCTCATCAATCCCTGCTCCCCAATCCGAAATAAGCAGGGGCATAAAGGCTTCAAGGTTGCAGAAAGCTGACCTGCATGTGCCAGCACAGTGCACAGGATGCAGTATACAGATTAAGTGCTGCCTCTCTCCTGCATCCGTGGCTGAGGAAGAGGCCTGCTCTGATGGCCAAGGGGATCAGAGGCTGTGGGAGAGTAGTTTTCTGCCTGGTTTCTTTCCGGTTACGTGGCAGAGCCAGGGTCACCAAGCAGAAGAGCCCTGCCCTTCTATGAAGTGATGACCAGGAGGGTCGTGTAGGTAGATGCAGGTGCTTCTCCCAAGGCCTTGTGATGGATGCAAAGCTAGCATCCCTGCTCCAATGCAGACTTACCAGGTGAGGTGGTATTCCAAAACTGACACCAGCCTTGCCGTGAGTGGGTGTGACCCAGGGGTGTCACCACCTGCCTGGGCCTCTCACAGGGAGAGGCGGCTCACTGACCTCTGACCAGCCCTGATCATGGGATGCTCAGAGCAGGGGCCTCTGAATAGAGGGCAGGGTGGGAGAGGAGGAGAGAGGCCTTGGAGGGCAGGGACCAGGCACTCAGAGTTCATACTGGCTGAGTGTGCCTCGGCTCCTGGGACTAATAACAGCAATAAATTAAGTTGAATTGCAGCTTATCCTTTACCGAAGAGCTTACGCTTGCATTCTTTTATCTGGTTGTCATAGTCCTGAGTCCTCTCCTTCCCTAAAATGAAAACGAAGGCACTGTACACGACTATTGAGATGACTGTCCCCATCCCAATCCAGAGGGGCTGGCAGGCCCAATGGAGGCTCCACGTGGGCAAGTGACCCTGAACTAAGGTCCAGGAGGACTCTGAGGGCTCCGATGGTGGCCCAGCCTCACTGAGGCCCCTGTGGGAGGCAGGTGAAGACTTGCTTCATACATTCAGTCTAGTTTCATTGAGCCTCTTCTAAATCCCAGACAGAGCGCTAAACATTAACCACAGTGTTAATGTTAGTGCTAAACATAAACCACCTCATTTAATGTTCCTGTGAAGGCATCCTCACCCAGGAGCTCTTGTTCTTGGTGAGCATCCTTTCCAGGGGAAGGATCTGAGCTGCCAGGAGTGTCATCTCTCAGCCCAGAATCAGTCCCCGCCTCCCTGCCAGAGTCAGCCATGCCTGGTGCCCTTGCAGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGTGACCCCATAGACGGCACCCCACCAGGCTCCCCCGTCCCTGGGATTCTTCAGGCAAGAACACGGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCGTCGTGTCAGACTCTTAGGGACCCCATGGACTGCCGCCCACCAGGCTCCTCTGCCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATCGTGACATCCAAAGTCAGCACCGATCCTCAGATTAGGGGCCACTAACCACCTCCTCCCTTCCCCAG
Seq C2 exon
ACATACACAGGCTCCATCCTGGTGGCGGTGAACCCGTTCCAGGTGCTGCCCCTCTACACCGTGGAGCAGGTCCAGCTGTACTACAGGCACCATGTGGGCGAGCTGCCGCCGCATATCTTTGCCATTGCCAACAGCTGCTACTTCAACATGAAGAAGAACAAGAGGGACCAGTGTTGCATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGATCCAAGCAGAGGA
R:
TGATAATGCAACACTGGTCCCT
Band lengths:
335-1966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]