GgaINT0047483 @ galGal3
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24093139-24093838:-
Coord C1 exon
chr7:24093642-24093838
Coord A exon
chr7:24093248-24093641
Coord C2 exon
chr7:24093139-24093247
Length
394 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CCATATCCATGTCCTCTCAGCTA
3' ss Score
5.83
Exon sequences
Seq C1 exon
ACACGTAAGACTGGGAGCGGCTTCAGCTACAACATCCACTACTGGCTGGGTAAGAACTCGAGCCAGGACGAGCAGGGGGCGGCCGCCATCTACACCACGCAGATGGATGAGTATCTGGGCTCTGTGGCCGTGCAGCACCGTGAGGTCCAGGGCCATGAGAGCGAGACATTCCGTGCATACTTCAAGCAGGGACTCAT
Seq A exon
GTAAGTTGCCAACATGGGCGCCCTGTTGCTTGCCATGGCTATGCTTCCTGCCTTGCCAGAAGGGAAGGGAATGGGAAGGGAATGGCATTGGGAAGGCAATCCTCTGCATCAAGATAAAGGTAGATGTCACATTGAGTGACATGGTTTTGTGGTATGGAGGGGATGGGTTGATGGTTCGATCGAATGATCTTAGAGGTCTTTCCAACCTTAATGATTTTATGACCCCATGGGAACAACTCTACTCTGGGGAGGTGGGATGTTGGCCTGGATTCCATCTTACAGTGTCTATTACTTGTACCAGTGGGTAGTGGTTTCCAGGCATATGGGCAGGAGAAGATCCTTGCTGGAGTGGGAAGGGTGGCCCAAGGCTTATGCCATATCCATGTCCTCTCAG
Seq C2 exon
CTATAAGCAGGGTGGGGTGGCCTCAGGCATGAAGCACGTGGAGACCAACACCTACAACGTCCAGCGCCTGCTGCATGTGAAGGGCAAGAAGAACGTGGTGGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(68.7=86.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(8.0=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTAAGACTGGGAGCGG
R:
GCAGCCACCACGTTCTTCTT
Band lengths:
302-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]