BtaINT0159750 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107152142-107153049:+
Coord C1 exon
chr2:107152142-107152338
Coord A exon
chr2:107152339-107152940
Coord C2 exon
chr2:107152941-107153049
Length
602 bp
Sequences
Splice sites
5' ss Seq
TGTGTACGG
5' ss Score
0.19
3' ss Seq
CAGTTCACATCTCTTCACAGGAT
3' ss Score
7.32
Exon sequences
Seq C1 exon
ATCCACAAGACAGGCAGCAACCTGTCCTATGACATTCATTACTGGATCGGCCAGGCCTCGTCCCAGGACGAGCAAGGGGCGGCTGCCATCTACACCACGCAGATGGATGACTTTCTGAAGGGCCGGGCCGTCCAGCACCGTGAGGTCCAGGGCAACGAGAGTGACACCTTCCGAGGCTACTTCAAGAAGGGCATTGT
Seq A exon
GTACGGAGGTGCACGCTACAGGCTCGGGAATGGAGCCAGGGCTGGGAGGGATACCTGAGGCTGGGGGGCAGACCTGGGGCTGGAAAGGGAGCCTGAGGCTCTGCAGGGAGCCCATGAAGGTAATTTTTGTTCACCTTTCCATTCCCCACCCCCATCTCTCCTGCTGCCCTGTCCTTGGTCTTCAGCCTTGAGTTTGGGAGGAGACACAATTCTGTCTTCAGCATTTTCCCTCTTCCCTTCGCTTCAGTCCCCTTGTCCTGTCCTTCCACATGGCCCCATTACCATGCACCCACCTTTTGCAGGCCTCTGAGCAGGGCTAGAACTAGGGTGAGGCAAGCGAGGCACCTAGGGTACAAAGTCCAAGGAGGCACTCACGGCCAGGGTCATGCAAACGGAGGCGATAGAGTGACCTTGCACTTGCATGGCCCTGAGAGTGAGTGCCTTTTTGGGGTTTGTGACCCCAAGGCCTCAGGCAGCTCTTTACTCCCAGCCCCAGCCCTCAAATGGGCCCCGTGGCAACCACATCCCCAGGATCTGGGAGGATGGGGGGTCTGTCACACCTCCCAGCCCACTCCCTTGGGTCAGTTCACATCTCTTCACAG
Seq C2 exon
GATCCGGAAAGGGGGCGTGGCTTCTGGCATGAAGCAAGTCGAGACAAACTCCTATGACATCCAGCGGCTGCTCCACGTAAAGGGCAAGAGGAATGTGGTGGCCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543:ENSBTAT00000024683:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(68.7=86.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(8.0=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACAAGACAGGCAGCAAC
R:
CCGGCCACCACATTCCTCTT
Band lengths:
302-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]