RnoINT0162865 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81698401-81699710:+
Coord C1 exon
chr9:81698401-81698597
Coord A exon
chr9:81698598-81699601
Coord C2 exon
chr9:81699602-81699710
Length
1004 bp
Sequences
Splice sites
5' ss Seq
TGTGTAGGG
5' ss Score
-2.69
3' ss Seq
TGGTTTCCTTTCTTTCCCAGGAT
3' ss Score
10.5
Exon sequences
Seq C1 exon
ATCCACAAGACCGGCAGCACCCTCTCCTACGATATCCACTACTGGATTGGCCAGGACTCGTCCCAGGATGAGCAGGGGGCAGCTGCCATCTACACAACACAGATGGATGACTACCTGAAGGGCCGGGCTGTCCAGCACCGTGAGGTCCAAGGCCATGAGAGCGACACATTCCGGAGCTACTTCAAGCAAGGCCTTGT
Seq A exon
GTAGGGAGGGGTACACCTGGGTCTGGGAGGACGCCAAGACTGGTCATAAGCAGTGGGGACTGCGACATGGGGGCTGGGCTAAAGACACAGGGACGTTTAGGCTCACAGAGAGACTCTGCACAGTGGGAGGTGAGTTGGCCAGATGAGATGCCTGAAGCTATGGGGGCTCTGGGGAGCTCATATGATTTTTGTTGATTTTTCTCCACCTTTCTACCCCTCAGCCTTTTATCTGCTGTTGCTCTGACCTTGGCCCGTTCCTCTGAGTCTACGTTGGCTGGATTTACCCCTTGGGCCCTTCTGAAACACTGTGACATTGGCCTGTGAATTCTGTACCTCAGCTCTTGTCTGCAGGGACTGCTCAGGGCCTGAGGCCCTCAGACTGTTACAGCAAGCCACGCCCGCTCAGGCTAACTGGCAGGTGGCTGCTCCCTCTTCTCTAATCAGGCCTTTCACTAACAATACAAACACCTCCTACTTTTTCTAGAAAAGTCCAAAGCTTGCTTTCCTCACGGAGACACCTGCTCACAGCAGTTTCCTTTCCCTTGTAGGAGGTGGAAGCTCTCCAGTCAGCCACAGTCCCTACCTTTCCTTTTTGTACTGTTCTCTTCTGCTCGAAACACAGCCCACGGTTACTCTCTGGCATTTGAGTGGCATTTCTCCCTTCTTCTGCCTCAGTCTCCTGTCACCAGGGTCCGGCATTATGCCCATTTTCTTCTCTCCAAATCACTATGATTATTTTTGCAAACCGCTCTGCAGGGCAGGGAGCTAGGGCAAGGGACAGGAAACGTACAATGCAGGGTCAGGTACAACAACGTGCTACAGGCCAGCCAAGCCCTTGTAGGACACTGACGGCGAATGTAAGCTTGATGTTTGAACCCTAAGTATTTCCTTTGCCCTCTCAGGCTAACTGGCAGGTGGCTGTCCCAGTTGGGACTCCAGAGGGCCCCAGACAGCTCAGGACCTTGGCACACCTCTCCCACTCAATGGTTTCCTTTCTTTCCCAG
Seq C2 exon
GATCCGGAAAGGGGGCGTGGCTTCTGGCATGAAGCACGTAGAAACAAACTCCTGTGATGTCCAGCGACTGTTGCACGTCAAGGGCAAGAGGAATGTGCTGGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(68.7=86.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(8.0=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACAAGACCGGCAGCA
R:
CCAGCCAGCACATTCCTCTTG
Band lengths:
302-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]