BtaINT0024432 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55988239-55989904:+
Coord C1 exon
chr5:55988239-55988435
Coord A exon
chr5:55988436-55989795
Coord C2 exon
chr5:55989796-55989904
Length
1360 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CGCAACGGCTGTTCCCTCAGCTA
3' ss Score
4.68
Exon sequences
Seq C1 exon
ACCCGGAGAGTGGGCTGCCTCCTCTCCCAAGACATCCACTTCTGGATTGGGAAGGACTCCTCCCAGGATGAACAGAGCTGCGCAGCCATCTACACTACGCAGCTGGACGACTACTTGGGGGGCAGCCCCGTTCAGCACCGGGAGGTCCAGTACCACGAGTCCGACACCTTCCGTGGCTACTTCAAGCAGGGCATCAT
Seq A exon
GTGAGTAGCTGGGCACACAGCAAGGATGTAGACGTGGTCCACCAAAGAGGAAACCCAAAGGCTAAAAAGTATGCGAAGAAAGTAATCAGAGAAATGCGAATCAAAACAAAGCTGTCCTCTCCACCAGTGTAAGTTAGAGAGCTGGGTGGTGCTGAGTGTTGGCAAGGCTGTGGGGAGATGGGCACCCGGGGGCCCTGCCGGTGGGAACGAGGACTGGCCCAGTGTTCCGGAGGGCAGTCTGCTACTGCCACAAGGGCACGGGAGCCAGAATGTTCACAGTGGTATTAGTGGTGGTGAGAAGCTGCAGGCAGTGGGGCATGTGCCTCCCCCAGGGAGACTGAACAGGAGAAACACTCCGAGACAGCAGGGAGTACCATGCCATCACATTAGAGACACATCTGACCTGTGGACACACCTTAAAAACACTGGGCTTAAGGAACACAGGAAGAAACAGGCTTGAAATATAGAACAGAATGCCAATTCCTGTTTGTAAAAAATGACATAAGCACAAAACAACAGGCCATGTTTTATCAGAATGAAAATAGAAAGATAGATGTTAAACGGTTAGAATGGATGCCTATGGTGGGGAGGAAAAGGCAGGGAGGGGAGTTTATGCAGATAAAAGGGAACACATACACTGCAAGAGCGGGGTCTTGTAAAGGCCGGTGATGACAGCCTGCCATGAACTGAGGAGTTTGATCACCTCCAAACTTTACACTGGAGATTGACAACAAAAGGATTCCAAGGAGCTCAAGCGTTCTGAGGCTGCTTGAAGGCCAGCTTCTTGCAGGTGAGCAGTCCTCACTGAGGCCCCATTGGGCACAGAGCAGCCTGCTGAACCACCAGGGAACCCAGCAACGGAGGCCCTCTGCTCCCGGGGGCTTTCTGGGCACCCTTCACGTGTGGGATGCCTAGAGGAGGCTGGGTTGGGGTGAGAACCAGAGGCAGGAGAGTGGTTTCCGGGAGTGAGTTGGTCTTCAGGCCACGGGAGATGGCCTGAAGAGGGCCCTGCCCCAACACACATGATGTTCAGCTTCAAGAACAAAACAAAACAAGCTCTTCCTGCCGTGGGGATTATCACTCCTCTGTCTGGAGGTCTAGTCCTCCGGTGGTTGGTTCCTACTCTTAATATCTCAACTCAAATGTCAGTCCTCCAGAGAAGACAGCCCCAAATGTTCGGTCAAAAAGCCTCCACTAGGGGCAACTCTGTGGCAGGGGTGACCAGCATCAGTGTTTGCCTTGCTCATTTACTGTCATCACCCATGTGGGCAAAGGCTGCCTCTGTGTGGCCCACCACTCTCTCCCCAGGACCTGGCAAACAGCAGGTTCTCAGTAAATAACGCAACGGCTGTTCCCTCAG
Seq C2 exon
CTACAAGAAAGGGGGTGTGGCCTCTGGGATGAAGCACGTGGAGACCAACGCCTACAACGTGAAGCGGCTGCTGCATGTGAAAGGGAAGAGAAACATCCGGGCCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(68.7=86.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(8.0=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGCTGCCTCCTCTC
R:
GTGGCCCGGATGTTTCTCTTC
Band lengths:
295-1655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]