HsaINT0015961 @ hg38
Intron Retention
Gene
ENSG00000135407 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr12:57811019-57813423:-
Coord C1 exon
chr12:57813227-57813423
Coord A exon
chr12:57811128-57813226
Coord C2 exon
chr12:57811019-57811127
Length
2099 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTGAATGGATGTTCCCTTAGCTA
3' ss Score
3.74
Exon sequences
Seq C1 exon
ACCCGGAGAGTGGCCAGTCTCCTATCCCAGGACATCCACTTCTGGATCGGGAAGGACTCCTCCCAGGATGAGCAAAGCTGCGCAGCCATATATACCACACAGCTGGACGACTACCTGGGAGGCAGCCCTGTGCAGCACCGAGAGGTCCAGTACCATGAGTCAGACACTTTCCGTGGCTACTTCAAGCAGGGCATCAT
Seq A exon
GTGAGTAGGGGTGCACAGAGCAAGGACAGAAACAGCAGTTTACAGAGGAGGAAACCCAAAAGGCCAACATGCATTATCAAGAAAGTAATCAGAGAAATGCAAATCAAAACAAAGCTGTCACTTCCACCCACTAGAGCAGCAGATTAAACAGCTGGGAGGTGCCAAGTGTTGGCAAGGCTATGGGGAAATAGGAGCCCTTGTGCCCTGCTGATGGAAGTGTGGACTAGCGCAGCATCCTGGAGAGTAGTCAGTGCCACTTGCAAATCCCACTTCTGCATGTGTAACTCACAGAAATCCTCACGTATCCAGGTCCATAAGGGCACATGGACCAGACTGTTCATAGCAGCCTCATTAATGATGTTAGGAAGCTGCAGGCAACGTAGGTGTCCATCACTCGGAGACTGGACATGCACACCACGGAGTATTATGCAGTAGCCAGAAGCAACAGATTAGATACACACCTAACACAAGGACAGAGCTCACAAACATGGTGCTTAGCACACAAAGTAAGAAACAGACTAAGACATATAACAGAATGCCAATTTCTGTTTTAAAAAGCACACGCATGGCCAGGCATGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGATCAACATGGTGAAACCCCGTCTCTACTAATAATACAAAAATTAGCCGGGCATGCTGGTGCACACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCATTTGAACCCAGGAGGCGAAGGTTGCACTGAGCTGAGATCATGCCACTGCCCTCCAGCCCCGCAACACAGCAAGACACCATCTCAAACAAAACAAAACAAAACAAAAACATGCACACAAAACAACAGGATGGGTTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAAGAGGATAGCTTGAGCCCAAGAGTTCAAGATCAGCCTAGGCAACACAGTAAGACCCTCATCTCCACAAAAAATATTTTGTAAAAAAGCTAGCCAGGCATGGCGGTGCACTCCTATAGTCCTAGCTACTCCATGGGCTGAGGGTATTGAGCCCTCAATTATCGAGCCTGCAGTCCCTGATGAGGATCACTTGAGCCCGGGAGGTCAAGGCTGCAATGAGCCATGATTGCACTATTGAACTCTAGCCTGAGTGACAGAGTGAGACCCTGTCTTTAAAAAAAAAGGTGGGGGACACAGTTTACTAGAATGAAAATAAAAAGGTCAACAGTTAGAATGGAAGCGTATTGGGGAGAGGAATGGGAGTAGGACAGGCAGATAAAGGGAATGCACAGACACATAACACTAGAGAGGGAGCGAAGGCTGATGATAATGTTCCATCAACTGAGAAGTTTAACTCAAAACTTTGCCCCTGATATTAAAACAAAAAGAGGAATTCCAATGAGCTTGAGAATTGTGAGGCTGGGCCAAGATCAGCTTCTTGCAGGTCAGCAGTCTCCACTGACTGAGGCCCTTCTGGGCACAGAGGAGCACACTGAGCCACTGGGGAACCCAAGGACAGAGCCCCTCTGCTCCAGGGCTACCTTCCGCATTCCCTTAAAGTGCAGGACCCCTGGCTCGGAGGCTGGGCTGGGCTGAGTGCAGGGCGGGTGAGCTGATTCCTAGGGTAGGTGGTCTTAAGGCCGTGGAGTCATTAATGCTTCTGCTGCAGCACAACTTGTATCCCTCTCCCAGTAACACACTGGCATTCAGACAGTTCCTGGAACAAAACAAGCCCTCTGTGGTGCAGGGGTCTTTGTCACTGATGTCTCCTGGACACTGTTATAGTGCCTGGAGCACTATTCTTCTGGGTATTGGTTCATTTTCCTTGTAGTATCTCAGTTCAAATGTCATTTCTTCAGAGAAGACTGCCCCAACTCGCTACCAGAAAGTCACTCACCCAGTCTACTTGTGGGGCAGCAGCTGCCACCATCTGTATTTACCTTGCTGATGTACTGTCATCACATGAGTGAGGCTGCATCTGTGTAATTCACCACTGTCTCCCCAGAACCTAGCACATAGCAGGCACTCAAATAACTGAATGGATGTTCCCTTAG
Seq C2 exon
CTACAAGCAGGGGGGTGTCGCCTCTGGGATGAAGCACGTGGAGACCAATACCTACGACGTGAAGCGGCTGCTACATGTGAAAGGGAAAAGAAACATCAGGGCTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135407:ENST00000257861:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(68.7=86.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(8.0=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development